RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 LTBRP36941 435 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 TNFSF9P41273 254 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 SLC39A14Q15043 492 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 GPBP1Q86WP2 473 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 GLYCTKQ8IVS8 523 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 BLZF1Q9H2G9 400 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 TMEM161AQ9NX61 479 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 PCDHA7Q9UN72 937 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 DNM3Q9UQ16 869 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 H3BNC9 293 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 I3L4J1 428 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 GUCY2FP51841 1108 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 GIT2Q14161 759 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 BRAPQ7Z569 592 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 TNPO1Q92973 898 aaKnown RBP6.3□□□□□ -1.4
CPNE3-208ENST00000614678 ELMO3Q96BJ8 720 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 COL25A1Q9BXS0 654 aaPredicted RBP6.3□□□□□ -1.4
CPNE3-208ENST00000614678 ARL5CA6NH57 179 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 C2CD2LO14523 706 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 FGF18O76093 207 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 ERLIN2O94905 339 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 KCNA5P22460 613 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 SLC11A1P49279 550 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 SOX4Q06945 474 aaPredicted RBP6.3□□□□□ -1.4
CPNE3-208ENST00000614678 PLPP4Q5VZY2 271 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 HAUS3Q68CZ6 603 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 SLC39A4Q6P5W5 647 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 ZNF410Q86VK4 478 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 SYT2Q8N9I0 419 aaPredicted RBP6.3□□□□□ -1.4
CPNE3-208ENST00000614678 COLGALT1Q8NBJ5 622 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 ZMAT2Q96NC0 199 aaKnown RBP6.3□□□□□ -1.4
CPNE3-208ENST00000614678 FTHL17Q9BXU8 183 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 FZD8Q9H461 694 aa6.3□□□□□ -1.4
CPNE3-208ENST00000614678 SRPRBQ9Y5M8 271 aaKnown RBP6.3□□□□□ -1.4
CPNE3-208ENST00000614678 TDRD15B5MCY1 1934 aaKnown RBP6.29□□□□□ -1.4
CPNE3-208ENST00000614678 CFAP54Q96N23 3096 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 A0A1B0GVL5 298 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 CASTOR2A6NHX0 329 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 ABLIM1O14639 778 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 PTGESO14684 152 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 GLP2RO95838 553 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 PRKCBP05771 671 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 NCLP19338 710 aaKnown RBP6.29□□□□□ -1.4
CPNE3-208ENST00000614678 SFPQP23246 707 aaKnown RBP eCLIP6.29□□□□□ -1.4
CPNE3-208ENST00000614678 UBA7P41226 1012 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 HYAL1Q12794 435 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 HYIQ5T013 277 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 CDCA2Q69YH5 1023 aaPredicted RBP6.29□□□□□ -1.4
CPNE3-208ENST00000614678 LLGL2Q6P1M3 1020 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 KCNT2Q6UVM3 1135 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 ERMNQ8TAM6 284 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 BARX2Q9UMQ3 279 aaPredicted RBP6.29□□□□□ -1.4
CPNE3-208ENST00000614678 SQORQ9Y6N5 450 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 A0A1B0GUA9 196 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 ANKRD63C9JTQ0 380 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 TBX10O75333 385 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 BRD1O95696 1058 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 SPATA31D3P0C874 917 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 RPL17P18621 184 aaKnown RBP6.29□□□□□ -1.4
CPNE3-208ENST00000614678 NASPP49321 788 aaPredicted RBP6.29□□□□□ -1.4
CPNE3-208ENST00000614678 SPATA31D4Q6ZUB0 917 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 THNSL1Q8IYQ7 743 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 C3orf58Q8NDZ4 430 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 TMEM161BQ8NDZ6 487 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 RASSF8Q8NHQ8 419 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 RAD54LQ92698 747 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 DHX58Q96C10 678 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 GOLPH3LQ9H4A5 285 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 ANKFY1Q9P2R3 1169 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 PARP2Q9UGN5 583 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 KIF3AQ9Y496 699 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 SPTLC2O15270 562 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 IL9P15248 144 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 NRIP1P48552 1158 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 MXD4Q14582 209 aaPredicted RBP6.29□□□□□ -1.4
CPNE3-208ENST00000614678 STK38Q15208 465 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 ARL6IP4Q66PJ3 421 aaKnown RBP6.29□□□□□ -1.4
CPNE3-208ENST00000614678 C12orf76Q8N812 135 aaPredicted RBP6.29□□□□□ -1.4
CPNE3-208ENST00000614678 NEK9Q8TD19 979 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 C18orf25Q96B23 403 aaPredicted RBP6.29□□□□□ -1.4
CPNE3-208ENST00000614678 DNAJC19Q96DA6 116 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 MARCH5Q9NX47 278 aa6.29□□□□□ -1.4
CPNE3-208ENST00000614678 ANK1P16157 1881 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 RECQL4O94761 1208 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 CA8P35219 290 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 SFR1Q86XK3 245 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 DEPTORQ8TB45 409 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 DDX12PQ92771 950 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 ARHGAP28Q9P2N2 729 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 VWA8A3KMH1 1905 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 GALTP07902 379 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 PDCP20941 246 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 AFMP43652 599 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 PRPF4BQ13523 1007 aaKnown RBP6.28□□□□□ -1.4
CPNE3-208ENST00000614678 NAB2Q15742 525 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 E2F4Q16254 413 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 SRGAP1Q7Z6B7 1085 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 MICAL1Q8TDZ2 1067 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 TCP11Q8WWU5 503 aa6.28□□□□□ -1.4
CPNE3-208ENST00000614678 LARP4BQ92615 738 aaKnown RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms