RNA–Protein interactions for RNA: ENST00000613856.4

SLIRP-212, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SLIRP, Length 420 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-212ENST00000613856 MTHFD1LQ6UB35 978 aa12.56□□□□□ -0.4
SLIRP-212ENST00000613856 HERC6Q8IVU3 1022 aa12.56□□□□□ -0.4
SLIRP-212ENST00000613856 RPUSD2Q8IZ73 545 aaKnown RBP12.56□□□□□ -0.4
SLIRP-212ENST00000613856 TMEM161BQ8NDZ6 487 aa12.56□□□□□ -0.4
SLIRP-212ENST00000613856 ASAP3Q8TDY4 903 aa12.56□□□□□ -0.4
SLIRP-212ENST00000613856 NOC3LQ8WTT2 800 aaKnown RBP12.56□□□□□ -0.4
SLIRP-212ENST00000613856 LMBR1Q8WVP7 490 aa12.56□□□□□ -0.4
SLIRP-212ENST00000613856 TRAPPC12Q8WVT3 735 aa12.56□□□□□ -0.4
SLIRP-212ENST00000613856 PSPC1Q8WXF1 523 aaKnown RBP12.56□□□□□ -0.4
SLIRP-212ENST00000613856 TMEM143Q96AN5 459 aa12.56□□□□□ -0.4
SLIRP-212ENST00000613856 TSG101Q99816 390 aa12.56□□□□□ -0.4
SLIRP-212ENST00000613856 POLD4Q9HCU8 107 aa12.56□□□□□ -0.4
SLIRP-212ENST00000613856 ARHGAP28Q9P2N2 729 aa12.56□□□□□ -0.4
SLIRP-212ENST00000613856 TRAF3IP3Q9Y228 551 aa12.56□□□□□ -0.4
SLIRP-212ENST00000613856 PHLPP2Q6ZVD8 1323 aa12.56□□□□□ -0.4
SLIRP-212ENST00000613856 ATG2AQ2TAZ0 1938 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 TRIM49BA6NDI0 452 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 PDXKO00764 312 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 ASAP2O43150 1006 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 CABYRO75952 493 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 PRPF6O94906 941 aaKnown RBP12.55□□□□□ -0.4
SLIRP-212ENST00000613856 KLRC1P26715 233 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 HOXD13P35453 343 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 DNM2P50570 870 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 PMS1P54277 932 aaKnown RBP12.55□□□□□ -0.4
SLIRP-212ENST00000613856 MKRN4PQ13434 485 aaPredicted RBP12.55□□□□□ -0.4
SLIRP-212ENST00000613856 CAPSQ13938 189 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 NFIL3Q16649 462 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 KNOP1Q1ED39 458 aaKnown RBP12.55□□□□□ -0.4
SLIRP-212ENST00000613856 EDRF1Q3B7T1 1238 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 MARCH8Q5T0T0 291 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 CDKAL1Q5VV42 579 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 CDCA2Q69YH5 1023 aaPredicted RBP12.55□□□□□ -0.4
SLIRP-212ENST00000613856 SARM1Q6SZW1 724 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 HAUS6Q7Z4H7 955 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 SESTD1Q86VW0 696 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 ZC3H3Q8IXZ2 948 aaKnown RBP12.55□□□□□ -0.4
SLIRP-212ENST00000613856 DUSP9Q99956 384 aaKnown RBP12.55□□□□□ -0.4
SLIRP-212ENST00000613856 TMEM206Q9H813 350 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 KMT5AQ9NQR1 393 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 TYW1Q9NV66 732 aaKnown RBP12.55□□□□□ -0.4
SLIRP-212ENST00000613856 MTUS1Q9ULD2 1270 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 COG5Q9UP83 839 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 PIEZO1Q92508 2521 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 ADGRA3Q8IWK6 1321 aa12.55□□□□□ -0.4
SLIRP-212ENST00000613856 CCDC169A6NNP5 214 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 SLC16A4O15374 487 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 GNAT1P11488 350 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 IL9P15248 144 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 TMOD1P28289 359 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 SNRPFP62306 86 aaKnown RBP12.54□□□□□ -0.4
SLIRP-212ENST00000613856 IGBP1P78318 339 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 DEFB103AP81534 67 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 POU5F1BQ06416 359 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 LAMTOR4Q0VGL1 99 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 DRP2Q13474 957 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 GPNMBQ14956 572 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 TPD52L1Q16890 204 aaPredicted RBP12.54□□□□□ -0.4
SLIRP-212ENST00000613856 ZC2HC1CQ53FD0 456 aaPredicted RBP12.54□□□□□ -0.4
SLIRP-212ENST00000613856 ANKRD40Q6AI12 368 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 EFCAB12Q6NXP0 572 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 MAP4K3Q8IVH8 894 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 NELFCDQ8IXH7 590 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 LRRC71Q8N4P6 559 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 DEPTORQ8TB45 409 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 GOLGA5Q8TBA6 731 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 TMEM174Q8WUU8 243 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 PRPF31Q8WWY3 499 aaKnown RBP12.54□□□□□ -0.4
SLIRP-212ENST00000613856 ACCSQ96QU6 501 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 NFKBIZQ9BYH8 718 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 THAP9Q9H5L6 903 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 FANCLQ9NW38 375 aa12.54□□□□□ -0.4
SLIRP-212ENST00000613856 CGNQ9P2M7 1197 aaKnown RBP12.54□□□□□ -0.4
SLIRP-212ENST00000613856 SUCLA2Q9P2R7 463 aaPredicted RBP12.54□□□□□ -0.4
SLIRP-212ENST00000613856 SMIM35A0A1B0GVV1 85 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 C17orf102A2RUQ5 167 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 DENND3A2RUS2 1198 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 CALUO43852 315 aaPredicted RBP12.53□□□□□ -0.4
SLIRP-212ENST00000613856 FGFR1OPO95684 399 aaKnown RBP12.53□□□□□ -0.4
SLIRP-212ENST00000613856 IQCF3P0C7M6 154 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 CLCN3P51790 818 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 EFNA5P52803 228 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 FKBP3Q00688 224 aaKnown RBP12.53□□□□□ -0.4
SLIRP-212ENST00000613856 SPAG1Q07617 926 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 TFDP1Q14186 410 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 FAM47CQ5HY64 1035 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 NFRKBQ6P4R8 1299 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 LRRC55Q6ZSA7 311 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 HS2ST1Q7LGA3 356 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 IFNLR1Q8IU57 520 aaPredicted RBP12.53□□□□□ -0.4
SLIRP-212ENST00000613856 C12orf56Q8IXR9 622 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 CSGALNACT2Q8N6G5 542 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 METTL13Q8N6R0 699 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 C7orf31Q8N865 590 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 CEP63Q96MT8 703 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 MAP7D2Q96T17 732 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 SLC9A7Q96T83 725 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 KIFC3Q9BVG8 833 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 GBP3Q9H0R5 595 aa12.53□□□□□ -0.4
SLIRP-212ENST00000613856 C2orf40Q9H1Z8 148 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms