RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	EXOC7	Q9UPT5	735 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	TRIM17	Q9Y577	477 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	DENND3	A2RUS2	1198 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	CTAGE15	A4D2H0	777 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	ERLIN1	O75477	346 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	CTAGE8	P0CG41	777 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	GLRA2	P23416	452 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	MCM3	P25205	808 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	RPL13	P26373	211 aa	Known RBP	12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	KLRC1	P26715	233 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	TMOD1	P28289	359 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	IRX5	P78411	483 aa	Predicted RBP	12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	ADAM9	Q13443	819 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	MFSD10	Q14728	455 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	GRIK4	Q16099	956 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	TEX35	Q5T0J7	233 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	EFCAB12	Q6NXP0	572 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	CTAGE6	Q86UF2	777 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	CTAGE4	Q8IX94	777 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	TXLNB	Q8N3L3	684 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	LRRC71	Q8N4P6	559 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	METTL13	Q8N6R0	699 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	ASAP3	Q8TDY4	903 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	PRPF31	Q8WWY3	499 aa	Known RBP	12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	KCNN1	Q92952	543 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	EEF2KMT	Q96G04	330 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	NOC4L	Q9BVI4	516 aa	Known RBP	12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	IRX2	Q9BZI1	471 aa	Predicted RBP	12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	ARHGAP28	Q9P2N2	729 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	SUCLA2	Q9P2R7	463 aa	Predicted RBP	12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	PLAGL2	Q9UPG8	496 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	NRCAM	Q92823	1304 aa		12.75	□□□□□ -0.37
VRK3-223	ENST00000601341	HAS3	O00219	553 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	CETN3	O15182	167 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	ASAP2	O43150	1006 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	TGFB1I1	O43294	461 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	GNA14	O95837	355 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	PGK1	P00558	417 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	NR2F2	P24468	414 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	GRK4	P32298	578 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	MTIF2	P46199	727 aa	Known RBP	12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	PSEN2	P49810	448 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	SNRPF	P62306	86 aa	Known RBP	12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	PURA	Q00577	322 aa	Known RBP	12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	MKRN4P	Q13434	485 aa	Predicted RBP	12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	NFIL3	Q16649	462 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	MAN2A1	Q16706	1144 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	PAPD7	Q5XG87	772 aa	Known RBP	12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	MTHFD1L	Q6UB35	978 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	LRRC55	Q6ZSA7	311 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	MAP4K3	Q8IVH8	894 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	KSR1	Q8IVT5	923 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	DEPTOR	Q8TB45	409 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	CHP1	Q99653	195 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	KIFC3	Q9BVG8	833 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	MYO6	Q9UM54	1294 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	TBX20	Q9UMR3	447 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	REXO2	Q9Y3B8	237 aa	Known RBP	12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	ZMYM2	Q9UBW7	1377 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	ARID2	Q68CP9	1835 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	LRRIQ4	A6NIV6	560 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	MSC	O60682	206 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	ADAMTS4	O75173	837 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	INHA	P05111	366 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	SMIM10L2A	P0DMW4	78 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	SMIM10L2B	P0DMW5	78 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	LAMTOR4	Q0VGL1	99 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	DRP2	Q13474	957 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	VWA3B	Q502W6	1294 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	TRAPPC11	Q7Z392	1133 aa		12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	ZC3H3	Q8IXZ2	948 aa	Known RBP	12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	NUCKS1	Q9H1E3	243 aa	Known RBP	12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	DDX20	Q9UHI6	824 aa	Known RBP	12.74	□□□□□ -0.37
VRK3-223	ENST00000601341	ADGRA3	Q8IWK6	1321 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	MYADML2	A6NDP7	307 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	MAP2K7	O14733	419 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	LCA5L	O95447	670 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	NR3C1	P04150	777 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	PLA2G4A	P47712	749 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	EFNA5	P52803	228 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	STRN3	Q13033	797 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	CAPS	Q13938	189 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	TFDP1	Q14186	410 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	MYBPC2	Q14324	1141 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	MARCH8	Q5T0T0	291 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	WDR93	Q6P2C0	686 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	RHPN2	Q8IUC4	686 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	LMBR1	Q8WVP7	490 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	MTG1	Q9BT17	334 aa	Predicted RBP	12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	FUT8	Q9BYC5	575 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	NDST4	Q9H3R1	872 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	HMX1	Q9NP08	348 aa	Predicted RBP	12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	PRDM10	Q9NQV6	1147 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	AGPAT3	Q9NRZ7	376 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	SETD4	Q9NVD3	440 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341	PTCH2	Q9Y6C5	1203 aa		12.73	□□□□□ -0.37
VRK3-223	ENST00000601341		K7ERI5	159 aa		12.72	□□□□□ -0.37
VRK3-223	ENST00000601341	PES1	O00541	588 aa	Known RBP	12.72	□□□□□ -0.37
VRK3-223	ENST00000601341	CLIC2	O15247	247 aa		12.72	□□□□□ -0.37
VRK3-223	ENST00000601341	GNAT1	P11488	350 aa		12.72	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms