RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 CNTNAP2Q9UHC6 1331 aa19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 CARNS1A5YM72 827 aa19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 USO1O60763 962 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 ASGR2P07307 311 aa19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 NCLP19338 710 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 MCM7P33993 719 aa19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 MLH1P40692 756 aa19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 PTENP60484 403 aa19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 NOTUMQ6P988 496 aa19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 TDRD5Q8NAT2 981 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 PRSS33Q8NF86 280 aa19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 KLHL5Q96PQ7 755 aa19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 POLR3FQ9H1D9 316 aaPredicted RBP19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 KCNH6Q9H252 994 aa19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 SMOC2Q9H3U7 446 aa19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 MRPL17Q9NRX2 175 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 ANKEF1Q9NU02 776 aa19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 LIMD1Q9UGP4 676 aa19.55■□□□□ 0.72
SHKBP1-223ENST00000600552 ARL5CA6NH57 179 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 POTEMA6NI47 508 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 PDGFBP01127 241 aaPredicted RBP19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 AKAP5P24588 427 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 SCNN1GP51170 649 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 VCPP55072 806 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 CAPSQ13938 189 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 TAS1R1Q7RTX1 841 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 PPFIBP1Q86W92 1011 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 CNNM3Q8NE01 707 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 ZFP42Q96MM3 310 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 HSD17B14Q9BPX1 270 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 TMEM175Q9BSA9 504 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 CSRNP2Q9H175 543 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 UBN1Q9NPG3 1134 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 MIOSQ9NXC5 875 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 KLK14Q9P0G3 267 aa19.54■□□□□ 0.72
SHKBP1-223ENST00000600552 ZDBF2Q9HCK1 2354 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 LRRIQ4A6NIV6 560 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 B4GALT5O43286 388 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 DGAT1O75907 488 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 NPTXRO95502 500 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 CNPP09543 421 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 LIG1P18858 919 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 AXLP30530 894 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 MBTD1Q05BQ5 628 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 SAFBQ15424 915 aaKnown RBP eCLIP19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 TMEM132AQ24JP5 1023 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 RABGGTAQ92696 567 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 ASIC4Q96FT7 647 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 PHOX2BQ99453 314 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 TMEM60Q9H2L4 133 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 GPRC5CQ9NQ84 441 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 PARP2Q9UGN5 583 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 IRAK3Q9Y616 596 aa19.53■□□□□ 0.72
SHKBP1-223ENST00000600552 F8W810 466 aa19.52■□□□□ 0.72
SHKBP1-223ENST00000600552 SEC24BO95487 1268 aa19.52■□□□□ 0.72
SHKBP1-223ENST00000600552 BRD1O95696 1058 aa19.52■□□□□ 0.72
SHKBP1-223ENST00000600552 URODP06132 367 aa19.52■□□□□ 0.72
SHKBP1-223ENST00000600552 ARF4P18085 180 aaPredicted RBP19.52■□□□□ 0.72
SHKBP1-223ENST00000600552 GLRA2P23416 452 aa19.52■□□□□ 0.72
SHKBP1-223ENST00000600552 ARL2P36404 184 aa19.52■□□□□ 0.72
SHKBP1-223ENST00000600552 MTMR3Q13615 1198 aa19.52■□□□□ 0.72
SHKBP1-223ENST00000600552 ZNF174Q15697 407 aa19.52■□□□□ 0.72
SHKBP1-223ENST00000600552 KIAA1841Q6NSI8 718 aa19.52■□□□□ 0.72
SHKBP1-223ENST00000600552 NXF3Q9H4D5 531 aaKnown RBP19.52■□□□□ 0.72
SHKBP1-223ENST00000600552 NR1I2O75469 434 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 LYPLA2O95372 231 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 SPATA31D3P0C874 917 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 RARRES1P49788 294 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 SPATA31D4Q6ZUB0 917 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 GLYCTKQ8IVS8 523 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 CCDC83Q8IWF9 413 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 COLGALT2Q8IYK4 626 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 HACE1Q8IYU2 909 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 CCDC51Q96ER9 411 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 B3GALT6Q96L58 329 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 MTMR9Q96QG7 549 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 SFXN1Q9H9B4 322 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 MARCH5Q9NX47 278 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 SORCS3Q9UPU3 1222 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 PIEZO1Q92508 2521 aa19.51■□□□□ 0.71
SHKBP1-223ENST00000600552 SOD2P04179 222 aa19.5■□□□□ 0.71
SHKBP1-223ENST00000600552 AVPR2P30518 371 aa19.5■□□□□ 0.71
SHKBP1-223ENST00000600552 CLCN4P51793 760 aa19.5■□□□□ 0.71
SHKBP1-223ENST00000600552 PTPN5P54829 565 aa19.5■□□□□ 0.71
SHKBP1-223ENST00000600552 GNL2Q13823 731 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-223ENST00000600552 C8orf76Q96K31 380 aa19.5■□□□□ 0.71
SHKBP1-223ENST00000600552 HERC2P3Q9BVR0 1158 aa19.5■□□□□ 0.71
SHKBP1-223ENST00000600552 COLEC11Q9BWP8 271 aa19.5■□□□□ 0.71
SHKBP1-223ENST00000600552 POLD4Q9HCU8 107 aa19.5■□□□□ 0.71
SHKBP1-223ENST00000600552 MAN1C1Q9NR34 630 aa19.5■□□□□ 0.71
SHKBP1-223ENST00000600552 FAM86C1Q9NVL1 165 aa19.5■□□□□ 0.71
SHKBP1-223ENST00000600552 TDRD15B5MCY1 1934 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-223ENST00000600552 MED24O75448 989 aa19.49■□□□□ 0.71
SHKBP1-223ENST00000600552 GLUD2P49448 558 aa19.49■□□□□ 0.71
SHKBP1-223ENST00000600552 ST3GAL1Q11201 340 aa19.49■□□□□ 0.71
SHKBP1-223ENST00000600552 PCBP1Q15365 356 aaKnown RBP eCLIP19.49■□□□□ 0.71
SHKBP1-223ENST00000600552 AMHR2Q16671 573 aa19.49■□□□□ 0.71
SHKBP1-223ENST00000600552 GPR149Q86SP6 731 aa19.49■□□□□ 0.71
SHKBP1-223ENST00000600552 CATSPER3Q86XQ3 398 aa19.49■□□□□ 0.71
SHKBP1-223ENST00000600552 PALB2Q86YC2 1186 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms