RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 AXLP30530 894 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 AFF1P51825 1210 aaKnown RBP13.96□□□□□ -0.17
TRIM28-212ENST00000597995 ELMSAN1Q6PJG2 1045 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 ASCL5Q7RTU5 278 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 FERMT3Q86UX7 667 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 FEZF2Q8TBJ5 459 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 OXER1Q8TDS5 423 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 CCDC51Q96ER9 411 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 RPS6KC1Q96S38 1066 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 HERC2P3Q9BVR0 1158 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 KCNK12Q9HB15 430 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 WRAP73Q9P2S5 460 aaPredicted RBP13.96□□□□□ -0.17
TRIM28-212ENST00000597995 DUSP12Q9UNI6 340 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 FAM186AA6NE01 2351 aa13.96□□□□□ -0.18
TRIM28-212ENST00000597995 PRR23AA6NEV1 266 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 CDKL5O76039 1030 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 ERLIN2O94905 339 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 EFEMP2O95967 443 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 ADH1AP07327 375 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 ITGA4P13612 1032 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 AOC1P19801 751 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 YWHABP31946 246 aaKnown RBP13.95□□□□□ -0.18
TRIM28-212ENST00000597995 NEK4P51957 841 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 POU5F1BQ06416 359 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 MXD4Q14582 209 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-212ENST00000597995 ANKRD1Q15327 319 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 C8orf34Q49A92 452 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 EARS2Q5JPH6 523 aaKnown RBP13.95□□□□□ -0.18
TRIM28-212ENST00000597995 CWF19L1Q69YN2 538 aaKnown RBP13.95□□□□□ -0.18
TRIM28-212ENST00000597995 COLGALT2Q8IYK4 626 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 RNF168Q8IYW5 571 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-212ENST00000597995 RNF149Q8NC42 400 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 SMG8Q8ND04 991 aaKnown RBP13.95□□□□□ -0.18
TRIM28-212ENST00000597995 NSUN7Q8NE18 718 aaKnown RBP13.95□□□□□ -0.18
TRIM28-212ENST00000597995 STAMQ92783 540 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 HAS1Q92839 578 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 GTF3C6Q969F1 213 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 RTP3Q9BQQ7 232 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 LXNQ9BS40 222 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 ZSWIM4Q9H7M6 989 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 RXFP1Q9HBX9 757 aa13.95□□□□□ -0.18
TRIM28-212ENST00000597995 ORC3Q9UBD5 711 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-212ENST00000597995 JAK2O60674 1132 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 PAPLNO95428 1278 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 NPR3P17342 541 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 XBP1P17861 261 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 PTENP60484 403 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 FOXK2Q01167 660 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 DSC1Q08554 894 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 NCBP1Q09161 790 aaKnown RBP13.94□□□□□ -0.18
TRIM28-212ENST00000597995 EMC2Q15006 297 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 XKR9Q5GH70 373 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 KIAA0319Q5VV43 1072 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 NOTUMQ6P988 496 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 IFNLR1Q8IU57 520 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-212ENST00000597995 GPR65Q8IYL9 337 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 FLCNQ8NFG4 579 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 HDAC7Q8WUI4 952 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 NKD2Q969F2 451 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-212ENST00000597995 KIF2CQ99661 725 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 WDR6Q9NNW5 1121 aaKnown RBP13.94□□□□□ -0.18
TRIM28-212ENST00000597995 MAN1C1Q9NR34 630 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 MARCH5Q9NX47 278 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 IPPQ9Y573 584 aa13.94□□□□□ -0.18
TRIM28-212ENST00000597995 C2orf16Q68DN1 1984 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 CCDC195A0A1B0GUA6 201 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 FAM205CA6NFA0 338 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 ARL5CA6NH57 179 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 C2CD2LO14523 706 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 TEX28O15482 410 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 MARCH6O60337 910 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 CCNT1O60563 726 aaKnown RBP13.93□□□□□ -0.18
TRIM28-212ENST00000597995 TSPAN1O60635 241 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 NR1I2O75469 434 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 GLUD1P00367 558 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 OR1G1P47890 313 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 GLUD2P49448 558 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 DSG1Q02413 1049 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 SPIRE1Q08AE8 756 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 TAS1R1Q7RTX1 841 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 CCDC105Q8IYK2 499 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 SLFN12Q8IYM2 578 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 TNFRSF25Q93038 417 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 NXPE3Q969Y0 559 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 GAD1Q99259 594 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 MTRQ99707 1265 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 COLEC11Q9BWP8 271 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 CSRNP2Q9H175 543 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 CHST7Q9NS84 486 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 RGL1Q9NZL6 768 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 EPS15L1Q9UBC2 864 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 WNT16Q9UBV4 365 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 FBXL21Q9UKT6 434 aa13.93□□□□□ -0.18
TRIM28-212ENST00000597995 PRG3Q9Y2Y8 225 aaPredicted RBP13.93□□□□□ -0.18
TRIM28-212ENST00000597995 MYO15AQ9UKN7 3530 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 PI15O43692 258 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 LYPLA2O95372 231 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 BAG4O95429 457 aaKnown RBP13.92□□□□□ -0.18
TRIM28-212ENST00000597995 NR5A1Q13285 461 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 TFDP1Q14186 410 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms