RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 RAB27AP51159 221 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 DSC1Q08554 894 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 PTGDRQ13258 359 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 MXD4Q14582 209 aaPredicted RBP11.64□□□□□ -0.55
LIG1-213ENST00000596672 PTPN14Q15678 1187 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 TMEM31Q5JXX7 168 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 CDCA2Q69YH5 1023 aaPredicted RBP11.64□□□□□ -0.55
LIG1-213ENST00000596672 GLB1LQ6UWU2 654 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 DDX53Q86TM3 631 aaKnown RBP11.64□□□□□ -0.55
LIG1-213ENST00000596672 RNF168Q8IYW5 571 aaPredicted RBP11.64□□□□□ -0.55
LIG1-213ENST00000596672 PAAF1Q9BRP4 392 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 MRPL9Q9BYD2 267 aaKnown RBP11.64□□□□□ -0.55
LIG1-213ENST00000596672 NFKBIZQ9BYH8 718 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 CCDC113Q9H0I3 377 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 CSRNP2Q9H175 543 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 RSAD1Q9HA92 442 aa11.64□□□□□ -0.55
LIG1-213ENST00000596672 NGRNQ9NPE2 291 aaKnown RBP11.64□□□□□ -0.55
LIG1-213ENST00000596672 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.64□□□□□ -0.55
LIG1-213ENST00000596672 SH2B1Q9NRF2 756 aaPredicted RBP11.64□□□□□ -0.55
LIG1-213ENST00000596672 RNF216Q9NWF9 866 aaPredicted RBP11.64□□□□□ -0.55
LIG1-213ENST00000596672 DENND4AQ7Z401 1863 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 A0A1B0GUA9 196 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 MEFVO15553 781 aaPredicted RBP11.63□□□□□ -0.55
LIG1-213ENST00000596672 DCXO43602 365 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 NPTXRO95502 500 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 CTSAP10619 480 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 CYP11B2P19099 503 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 MLH1P40692 756 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 ALDH7A1P49419 539 aaKnown RBP11.63□□□□□ -0.55
LIG1-213ENST00000596672 FXR2P51116 673 aaKnown RBP eCLIP11.63□□□□□ -0.55
LIG1-213ENST00000596672 SCNN1GP51170 649 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 HMGN5P82970 282 aaKnown RBP11.63□□□□□ -0.55
LIG1-213ENST00000596672 MAPK7Q13164 816 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 NAB2Q15742 525 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 HERC4Q5GLZ8 1057 aaPredicted RBP11.63□□□□□ -0.55
LIG1-213ENST00000596672 PDE12Q6L8Q7 609 aaKnown RBP11.63□□□□□ -0.55
LIG1-213ENST00000596672 PADI6Q6TGC4 694 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 IGSF22Q8N9C0 903 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 B3GALT6Q96L58 329 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 PNMA5Q96PV4 448 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 NACC1Q96RE7 527 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 CDCA3Q99618 268 aaPredicted RBP11.63□□□□□ -0.55
LIG1-213ENST00000596672 APOL6Q9BWW8 343 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 BACH2Q9BYV9 841 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 SMOC2Q9H3U7 446 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 PDZD7Q9H5P4 517 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 KLK14Q9P0G3 267 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 PUF60Q9UHX1 559 aaKnown RBP11.63□□□□□ -0.55
LIG1-213ENST00000596672 IRAK3Q9Y616 596 aa11.63□□□□□ -0.55
LIG1-213ENST00000596672 MTCL1Q9Y4B5 1905 aaKnown RBP11.62□□□□□ -0.55
LIG1-213ENST00000596672 E9PMD0 336 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 PTGESO14684 152 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 SSBP05455 408 aaKnown RBP eCLIP11.62□□□□□ -0.55
LIG1-213ENST00000596672 CNPP09543 421 aaKnown RBP11.62□□□□□ -0.55
LIG1-213ENST00000596672 SKIP12755 728 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 ITGA4P13612 1032 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 SP100P23497 879 aaPredicted RBP11.62□□□□□ -0.55
LIG1-213ENST00000596672 KRT17Q04695 432 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 SMC1AQ14683 1233 aaKnown RBP11.62□□□□□ -0.55
LIG1-213ENST00000596672 RABEP1Q15276 862 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 SAFBQ15424 915 aaKnown RBP eCLIP11.62□□□□□ -0.55
LIG1-213ENST00000596672 NT5DC1Q5TFE4 455 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 PPP4R3CPQ6ZMV5 832 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 HFE2Q6ZVN8 426 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 TAS1R3Q7RTX0 852 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 EXOC8Q8IYI6 725 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 TMEM130Q8N3G9 435 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 PGBD4Q96DM1 585 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 TMEM169Q96HH4 297 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 RPGRIP1Q96KN7 1286 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 KLHL5Q96PQ7 755 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 RUSC1Q9BVN2 902 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 PHF7Q9BWX1 381 aaPredicted RBP11.62□□□□□ -0.55
LIG1-213ENST00000596672 BHMT2Q9H2M3 363 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 POMKQ9H5K3 350 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 KIAA1024Q9UPX6 916 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 PRG3Q9Y2Y8 225 aaPredicted RBP11.62□□□□□ -0.55
LIG1-213ENST00000596672 DMDP11532 3685 aa11.62□□□□□ -0.55
LIG1-213ENST00000596672 CNTNAP2Q9UHC6 1331 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.61□□□□□ -0.55
LIG1-213ENST00000596672 LRRIQ4A6NIV6 560 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 ERLIN2O94905 339 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 MYBP10242 640 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 GJB2P29033 226 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 CCT6AP40227 531 aaKnown RBP11.61□□□□□ -0.55
LIG1-213ENST00000596672 TRAPPC10P48553 1259 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 GRIN1Q05586 938 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 RNASELQ05823 741 aaKnown RBP11.61□□□□□ -0.55
LIG1-213ENST00000596672 ORC2Q13416 577 aaPredicted RBP11.61□□□□□ -0.55
LIG1-213ENST00000596672 FAM187BQ17R55 369 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 KIAA0319Q5VV43 1072 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 NOTUMQ6P988 496 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 CD300LGQ6UXG3 332 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 FAM184AQ8NB25 1140 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 PPP2R3CQ969Q6 453 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 TBC1D32Q96NH3 1257 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 TMEM175Q9BSA9 504 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 GPR62Q9BZJ7 368 aa11.61□□□□□ -0.55
LIG1-213ENST00000596672 DDX19AQ9NUU7 478 aaKnown RBP11.61□□□□□ -0.55
LIG1-213ENST00000596672 LRWD1Q9UFC0 647 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms