RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 PIGRP01833 764 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 TNFAIP3P21580 790 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 ARL2P36404 184 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 PAFAH1B1P43034 410 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 STAT5BP51692 787 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 KIF22Q14807 665 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 ENOX2Q16206 610 aaKnown RBP12.21□□□□□ -0.45
LIG3-204ENST00000585740 KRT39Q6A163 491 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 GPAT2Q6NUI2 795 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 TRMT1LQ7Z2T5 733 aaKnown RBP12.21□□□□□ -0.45
LIG3-204ENST00000585740 ZNF572Q7Z3I7 529 aaPredicted RBP12.21□□□□□ -0.45
LIG3-204ENST00000585740 LMO3Q8TAP4 145 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 DEPTORQ8TB45 409 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 POMGNT1Q8WZA1 660 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 RUBCNQ92622 972 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 SLC10A4Q96EP9 437 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 HHIPL1Q96JK4 782 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 PARD6BQ9BYG5 372 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 TMEM134Q9H6X4 195 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 ZNF408Q9H9D4 720 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 RBPJLQ9UBG7 517 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 AJAP1Q9UKB5 411 aaPredicted RBP12.21□□□□□ -0.45
LIG3-204ENST00000585740 COQ4Q9Y3A0 265 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 PCDHGC5Q9Y5F6 944 aa12.21□□□□□ -0.45
LIG3-204ENST00000585740 PLXNA1Q9UIW2 1896 aa12.21□□□□□ -0.46
LIG3-204ENST00000585740 ZNF233A6NK53 670 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 ANKRD63C9JTQ0 380 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 CES2O00748 559 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 HNRNPDLO14979 420 aaKnown RBP12.2□□□□□ -0.46
LIG3-204ENST00000585740 EXTL3O43909 919 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 ZC3H11AO75152 810 aaKnown RBP eCLIP12.2□□□□□ -0.46
LIG3-204ENST00000585740 LGR5O75473 907 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 LDHAP00338 332 aaKnown RBP12.2□□□□□ -0.46
LIG3-204ENST00000585740 ADRB2P07550 413 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 ATP4AP20648 1035 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 ADSSP30520 456 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 LIG4P49917 911 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 SLC26A2P50443 739 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 MFAP3P55082 362 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 ERVK-9P63128 1117 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 FKBP1BP68106 108 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 CYP24A1Q07973 514 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 PPP3CAQ08209 521 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 TARBP2Q15633 366 aaKnown RBP12.2□□□□□ -0.46
LIG3-204ENST00000585740 C1orf220Q5T0J3 134 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 PRPF38BQ5VTL8 546 aaKnown RBP12.2□□□□□ -0.46
LIG3-204ENST00000585740 GJB7Q6PEY0 223 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 MOB2Q70IA6 237 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 ENOSF1Q7L5Y1 443 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 PLPPR4Q7Z2D5 763 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 SYCE1Q8N0S2 351 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 PARD3BQ8TEW8 1205 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 UBE2Q2Q8WVN8 375 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 HNRNPLLQ8WVV9 542 aaKnown RBP12.2□□□□□ -0.46
LIG3-204ENST00000585740 TCP11Q8WWU5 503 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 BBXQ8WY36 941 aaPredicted RBP12.2□□□□□ -0.46
LIG3-204ENST00000585740 OSBPL9Q96SU4 736 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 ZIC5Q96T25 663 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 TMEM117Q9H0C3 514 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 ARFGAP3Q9NP61 516 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 HDAC6Q9UBN7 1215 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 STYXL1Q9Y6J8 313 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 TRPM7Q96QT4 1865 aa12.2□□□□□ -0.46
LIG3-204ENST00000585740 MCM3APO60318 1980 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 PLXNB2O15031 1838 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 TARSL2A2RTX5 802 aaKnown RBP12.19□□□□□ -0.46
LIG3-204ENST00000585740 GRID2IPA4D2P6 1211 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 TISP43B9A030 160 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 NOP56O00567 594 aaKnown RBP12.19□□□□□ -0.46
LIG3-204ENST00000585740 DDX3XO00571 662 aaKnown RBP eCLIP12.19□□□□□ -0.46
LIG3-204ENST00000585740 MAFO75444 373 aaPredicted RBP12.19□□□□□ -0.46
LIG3-204ENST00000585740 CETPP11597 493 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 KLRC1P26715 233 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 GCLMP48507 274 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 GPC3P51654 580 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 EFNA5P52803 228 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 DLG4P78352 724 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 ARHGAP44Q17R89 818 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 CELF3Q5SZQ8 465 aaKnown RBP12.19□□□□□ -0.46
LIG3-204ENST00000585740 CCDC181Q5TID7 509 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 IER5Q5VY09 327 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 SMYD5Q6GMV2 418 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 SLC39A4Q6P5W5 647 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 CBWD2Q8IUF1 395 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 GPIHBP1Q8IV16 184 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 ANKRD13CQ8N6S4 541 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 SLC30A5Q8TAD4 765 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 U2AF1L4Q8WU68 220 aaKnown RBP12.19□□□□□ -0.46
LIG3-204ENST00000585740 TAF4BQ92750 862 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 CEP89Q96ST8 783 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 PCYT2Q99447 389 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 KIFC3Q9BVG8 833 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 GPR88Q9GZN0 384 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 ANKZF1Q9H8Y5 726 aa12.19□□□□□ -0.46
LIG3-204ENST00000585740 UBE2TQ9NPD8 197 aaPredicted RBP12.19□□□□□ -0.46
LIG3-204ENST00000585740 NCANO14594 1321 aa12.18□□□□□ -0.46
LIG3-204ENST00000585740 ADGRA3Q8IWK6 1321 aa12.18□□□□□ -0.46
LIG3-204ENST00000585740 GOLGA8IPA6NC78 632 aa12.18□□□□□ -0.46
LIG3-204ENST00000585740 GOLGA8JA6NMD2 632 aa12.18□□□□□ -0.46
LIG3-204ENST00000585740 LRRIQ3A6PVS8 624 aaPredicted RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms