RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 PPP4R3CPQ6ZMV5 832 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 DDX53Q86TM3 631 aaKnown RBP13.68□□□□□ -0.22
SS18-225ENST00000585121 GJD3Q8N144 294 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 VPS52Q8N1B4 723 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 KCTD17Q8N5Z5 321 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 IGSF21Q96ID5 467 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 POP1Q99575 1024 aaKnown RBP13.68□□□□□ -0.22
SS18-225ENST00000585121 TMEM175Q9BSA9 504 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 APOL6Q9BWW8 343 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 NT5C3AQ9H0P0 336 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 FZD8Q9H461 694 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 FAN1Q9Y2M0 1017 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 MUC3AQ02505 3323 aa13.68□□□□□ -0.22
SS18-225ENST00000585121 VPS37CA5D8V6 355 aaPredicted RBP13.67□□□□□ -0.22
SS18-225ENST00000585121 VWA3AA6NCI4 1184 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 ARL5CA6NH57 179 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 PP2D1A8MPX8 630 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 B4GALT5O43286 388 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 MBTPS2O43462 519 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 CXCL14O95715 111 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 POMCP01189 267 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 PRKCBP05771 671 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 SLC11A1P49279 550 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 PRPF4BQ13523 1007 aaKnown RBP13.67□□□□□ -0.22
SS18-225ENST00000585121 CUL4AQ13619 759 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 GIT2Q14161 759 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 SMAD2Q15796 467 aaKnown RBP13.67□□□□□ -0.22
SS18-225ENST00000585121 IL17AQ16552 155 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 APBB1IPQ7Z5R6 666 aaPredicted RBP13.67□□□□□ -0.22
SS18-225ENST00000585121 ZNF280BQ86YH2 543 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 MRPL43Q8N983 215 aaKnown RBP13.67□□□□□ -0.22
SS18-225ENST00000585121 ADPGKQ9BRR6 497 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 DNAJB4Q9UDY4 337 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 PARP2Q9UGN5 583 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 KIAA1671Q9BY89 1806 aa13.67□□□□□ -0.22
SS18-225ENST00000585121 ARID2Q68CP9 1835 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 HIDE1A8MVS5 230 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 E9PMD0 336 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 CDC25AP30304 524 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 MLH1P40692 756 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 COASYQ13057 564 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 ADHFE1Q8IWW8 467 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 BSNDQ8WZ55 320 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 MSLNLQ96KJ4 702 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 AK8Q96MA6 479 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 DRC1Q96MC2 740 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 RPS6KC1Q96S38 1066 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 GAD1Q99259 594 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 TIPINQ9BVW5 301 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 C1QTNF1Q9BXJ1 281 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 RNF39Q9H2S5 420 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 CLEC1BQ9P126 229 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 KCNG1Q9UIX4 513 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 BARX2Q9UMQ3 279 aaPredicted RBP13.66□□□□□ -0.22
SS18-225ENST00000585121 HES2Q9Y543 173 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 PHLPP2Q6ZVD8 1323 aa13.66□□□□□ -0.22
SS18-225ENST00000585121 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.65□□□□□ -0.22
SS18-225ENST00000585121 C2orf71A6NGG8 1288 aa13.65□□□□□ -0.22
SS18-225ENST00000585121 CCDC169A6NNP5 214 aa13.65□□□□□ -0.22
SS18-225ENST00000585121 ACKR2O00590 384 aa13.65□□□□□ -0.22
SS18-225ENST00000585121 INPPL1O15357 1258 aa13.65□□□□□ -0.22
SS18-225ENST00000585121 SLC26A4O43511 780 aa13.65□□□□□ -0.22
SS18-225ENST00000585121 DDHD2O94830 711 aa13.65□□□□□ -0.22
SS18-225ENST00000585121 SSBP05455 408 aaKnown RBP eCLIP13.65□□□□□ -0.22
SS18-225ENST00000585121 CTSAP10619 480 aa13.65□□□□□ -0.22
SS18-225ENST00000585121 OR1G1P47890 313 aa13.65□□□□□ -0.22
SS18-225ENST00000585121 SCNN1GP51170 649 aa13.65□□□□□ -0.22
SS18-225ENST00000585121 DMP1Q13316 513 aaPredicted RBP13.65□□□□□ -0.22
SS18-225ENST00000585121 LLGL2Q6P1M3 1020 aa13.65□□□□□ -0.22
SS18-225ENST00000585121 CDR2LQ86X02 465 aaPredicted RBP13.65□□□□□ -0.22
SS18-225ENST00000585121 SMRP1Q8NCR6 262 aa13.65□□□□□ -0.22
SS18-225ENST00000585121 CASP10Q92851 521 aa13.65□□□□□ -0.22
SS18-225ENST00000585121 CALML4Q96GE6 196 aa13.65□□□□□ -0.22
SS18-225ENST00000585121 NXF3Q9H4D5 531 aaKnown RBP13.65□□□□□ -0.22
SS18-225ENST00000585121 K7ERI5 159 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 NRP1O14786 923 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 GLP2RO95838 553 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 HOXB8P17481 243 aaPredicted RBP13.64□□□□□ -0.23
SS18-225ENST00000585121 AKAP5P24588 427 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 UBA7P41226 1012 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 AFF1P51825 1210 aaKnown RBP13.64□□□□□ -0.23
SS18-225ENST00000585121 HYIQ5T013 277 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 TMEM184AQ6ZMB5 413 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 CABP7Q86V35 215 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 INTS4Q96HW7 963 aaKnown RBP13.64□□□□□ -0.23
SS18-225ENST00000585121 MMTAG2Q9BU76 263 aaKnown RBP13.64□□□□□ -0.23
SS18-225ENST00000585121 COLEC11Q9BWP8 271 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 ZBP1Q9H171 429 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 C17orf75Q9HAS0 396 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 POLD4Q9HCU8 107 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 ZMYM2Q9UBW7 1377 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 RBM19Q9Y4C8 960 aaKnown RBP13.64□□□□□ -0.23
SS18-225ENST00000585121 PLXNA4Q9HCM2 1894 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 HIP1RO75146 1068 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 PEX3P56589 373 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 ZP2Q05996 745 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 DCAF4L1Q3SXM0 396 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 TPRNQ4KMQ1 711 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 RINT1Q6NUQ1 792 aa13.64□□□□□ -0.23
SS18-225ENST00000585121 ANKRD54Q6NXT1 300 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms