RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 PLS3P13797 630 aa11.32□□□□□ -0.6
TOP3A-209ENST00000580095 MXI1P50539 228 aa11.32□□□□□ -0.6
TOP3A-209ENST00000580095 DAB2IPQ5VWQ8 1189 aa11.32□□□□□ -0.6
TOP3A-209ENST00000580095 RASGEF1CQ8N431 466 aa11.32□□□□□ -0.6
TOP3A-209ENST00000580095 PRPF38AQ8NAV1 312 aaKnown RBP11.32□□□□□ -0.6
TOP3A-209ENST00000580095 XXYLT1Q8NBI6 393 aa11.32□□□□□ -0.6
TOP3A-209ENST00000580095 ACCSQ96QU6 501 aa11.32□□□□□ -0.6
TOP3A-209ENST00000580095 NFS1Q9Y697 457 aa11.32□□□□□ -0.6
TOP3A-209ENST00000580095 ANKRD62A6NC57 917 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 GOLGA6L10A6NI86 522 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 BCRP11274 1271 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 COMTP21964 271 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 KCNJ1P48048 391 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 CORO7P57737 925 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 DR1Q01658 176 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 MREGQ8N565 214 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 SUPT20HQ8NEM7 779 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 BSNDQ8WZ55 320 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 TRIM7Q9C029 511 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 PPP1R1BQ9UD71 204 aaPredicted RBP11.31□□□□□ -0.6
TOP3A-209ENST00000580095 NOVA2Q9UNW9 492 aaKnown RBP11.31□□□□□ -0.6
TOP3A-209ENST00000580095 UTP11Q9Y3A2 253 aaKnown RBP11.31□□□□□ -0.6
TOP3A-209ENST00000580095 PEX10O60683 326 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 CLSTN1O94985 981 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 SHBGP04278 402 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 CHRNB2P17787 502 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 CUL1Q13616 776 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 KIF22Q14807 665 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 INTS8Q75QN2 995 aaKnown RBP11.31□□□□□ -0.6
TOP3A-209ENST00000580095 TMC3Q7Z5M5 1100 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 MICALL1Q8N3F8 863 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 TAS1R2Q8TE23 839 aa11.31□□□□□ -0.6
TOP3A-209ENST00000580095 CALR3Q96L12 384 aaKnown RBP11.31□□□□□ -0.6
TOP3A-209ENST00000580095 NCANO14594 1321 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 TLDC2A0PJX2 215 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 E7EVH7 732 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 CES2O00748 559 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 TRAF1Q13077 416 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 TNIP1Q15025 636 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 SNRNP35Q16560 246 aaKnown RBP11.3□□□□□ -0.6
TOP3A-209ENST00000580095 ANO5Q75V66 913 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 SAMD7Q7Z3H4 446 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 PACS2Q86VP3 889 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 CCDC26Q8TAB7 109 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 MDM1Q8TC05 714 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 ATP8B4Q8TF62 1192 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 TATDN2Q93075 761 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 TMBIM4Q9HC24 238 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 CNOT8Q9UFF9 292 aaKnown RBP11.3□□□□□ -0.6
TOP3A-209ENST00000580095 INTUQ9ULD6 942 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 CTDP1Q9Y5B0 961 aaPredicted RBP11.3□□□□□ -0.6
TOP3A-209ENST00000580095 DENND3A2RUS2 1198 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 PHF20L1A8MW92 1017 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 PYGMP11217 842 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 NPTX2P47972 431 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 SKOR1P84550 965 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 POU5F1Q01860 360 aaKnown RBP11.3□□□□□ -0.6
TOP3A-209ENST00000580095 PGM5Q15124 567 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 KRT71Q3SY84 523 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 KDM7AQ6ZMT4 941 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 FBXO25Q8TCJ0 367 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 EPS8L1Q8TE68 723 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 ATG4CQ96DT6 458 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 UBIAD1Q9Y5Z9 338 aa11.3□□□□□ -0.6
TOP3A-209ENST00000580095 CCDC188H7C350 402 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 KRT5P13647 590 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 VCAM1P19320 739 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 CNGA1P29973 690 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 MAGOHP61326 146 aaKnown RBP11.29□□□□□ -0.6
TOP3A-209ENST00000580095 CETN1Q12798 172 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 BAATQ14032 418 aaPredicted RBP11.29□□□□□ -0.6
TOP3A-209ENST00000580095 NFIL3Q16649 462 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 ARHGEF16Q5VV41 709 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 TTC27Q6P3X3 843 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 SLC9A9Q8IVB4 645 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 NIM1KQ8IY84 436 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 ZKSCAN4Q969J2 545 aaPredicted RBP11.29□□□□□ -0.6
TOP3A-209ENST00000580095 MAGOHBQ96A72 148 aaKnown RBP11.29□□□□□ -0.6
TOP3A-209ENST00000580095 KCND2Q9NZV8 630 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 MDH1P40925 334 aaKnown RBP11.29□□□□□ -0.6
TOP3A-209ENST00000580095 SLCO1A2P46721 670 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 IFFO1Q0D2I5 559 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 CYFIP1Q7L576 1253 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 CCDC125Q86Z20 511 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 FMO2Q99518 471 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 FAM118BQ9BPY3 351 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 CXorf56Q9H5V9 222 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 RPAP3Q9H6T3 665 aaPredicted RBP11.29□□□□□ -0.6
TOP3A-209ENST00000580095 TMEM206Q9H813 350 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 MYOZ2Q9NPC6 264 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 SUFUQ9UMX1 484 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 ADGRA3Q8IWK6 1321 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 MYH11P35749 1972 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 SPOPO43791 374 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 ZNF862O60290 1169 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 KCNA3P22001 575 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 ANXA13P27216 316 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 PTENP60484 403 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 SNX1Q13596 522 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 PTGISQ16647 500 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms