RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 FASNP49327 2511 aaKnown RBP6.81□□□□□ -1.32
VPS53-219ENST00000576019 AFDNP55196 1824 aaKnown RBP6.81□□□□□ -1.32
VPS53-219ENST00000576019 H3BM21 787 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 J3KRW8 73 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 ZNF561-AS1K7EIQ3 104 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 M0R082 166 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 NCK2O43639 380 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 GSNP06396 782 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 PTX3P26022 381 aaPredicted RBP6.81□□□□□ -1.32
VPS53-219ENST00000576019 EPS15P42566 896 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 MTNR1BP49286 362 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 KIF11P52732 1056 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 ITPK1Q13572 414 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 CNN3Q15417 329 aaKnown RBP6.81□□□□□ -1.32
VPS53-219ENST00000576019 INF2Q27J81 1249 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 LCE2CQ5TA81 110 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 ESRP1Q6NXG1 681 aaKnown RBP6.81□□□□□ -1.32
VPS53-219ENST00000576019 FRMD7Q6ZUT3 714 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 OSTM1Q86WC4 334 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 SIRT2Q8IXJ6 389 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 DMRTC2Q8IXT2 367 aaPredicted RBP6.81□□□□□ -1.32
VPS53-219ENST00000576019 TDHQ8IZJ6 230 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 ZNF417Q8TAU3 575 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 ERP27Q96DN0 273 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 CDK5RAP3Q96JB5 506 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 CHAMP1Q96JM3 812 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 FCRL3Q96P31 734 aaPredicted RBP6.81□□□□□ -1.32
VPS53-219ENST00000576019 ACAP3Q96P50 834 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 ZNF587Q96SQ5 575 aaPredicted RBP6.81□□□□□ -1.32
VPS53-219ENST00000576019 CDX2Q99626 313 aaPredicted RBP6.81□□□□□ -1.32
VPS53-219ENST00000576019 ISCA1Q9BUE6 129 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 CORO2BQ9UQ03 480 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 ACTL7BQ9Y614 415 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 ADGRB1O14514 1584 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 COL2A1P02458 1487 aaPredicted RBP6.8□□□□□ -1.32
VPS53-219ENST00000576019 DEAF1O75398 565 aaPredicted RBP6.8□□□□□ -1.32
VPS53-219ENST00000576019 ALDH2P05091 517 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 CLEC2LP0C7M8 214 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 ENPP1P22413 925 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 RRM1P23921 792 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 ITGB8P26012 769 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 HTR1BP28222 390 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 RFC4P35249 363 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 LACTBP83111 547 aaPredicted RBP6.8□□□□□ -1.32
VPS53-219ENST00000576019 SOX4Q06945 474 aaPredicted RBP6.8□□□□□ -1.32
VPS53-219ENST00000576019 NMIQ13287 307 aaPredicted RBP6.8□□□□□ -1.32
VPS53-219ENST00000576019 PGS1Q32NB8 556 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 CT83Q5H943 113 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 DACT2Q5SW24 774 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 ICE2Q659A1 982 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 MBLAC2Q68D91 279 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 SWSAP1Q6NVH7 229 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 SV2AQ7L0J3 742 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 MAP4K3Q8IVH8 894 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 IL17REQ8NFR9 667 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 SHISA4Q96DD7 197 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 AGO4Q9HCK5 861 aaKnown RBP6.8□□□□□ -1.32
VPS53-219ENST00000576019 CYP4F12Q9HCS2 524 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 CLIC5Q9NZA1 410 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 POLG2Q9UHN1 485 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 PCOLCE2Q9UKZ9 415 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 L1RE1Q9UN81 338 aa6.8□□□□□ -1.32
VPS53-219ENST00000576019 MRC1P22897 1456 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 A0A087WV62 115 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 DTNBO60941 627 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 PYGLP06737 847 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 TMEM253P0C7T8 217 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 HSD3B1P14060 373 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 TPP2P29144 1249 aaPredicted RBP6.79□□□□□ -1.32
VPS53-219ENST00000576019 CACNB3P54284 484 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 ANO4Q32M45 955 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 CCDC184Q52MB2 194 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 DGKKQ5KSL6 1271 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 ANGEL2Q5VTE6 544 aaKnown RBP6.79□□□□□ -1.32
VPS53-219ENST00000576019 C2CD5Q86YS7 1000 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 KRT78Q8N1N4 520 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 RIN2Q8WYP3 895 aaPredicted RBP6.79□□□□□ -1.32
VPS53-219ENST00000576019 LRTOMTQ8WZ04 291 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 NUP62CLQ9H1M0 184 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 LGR6Q9HBX8 967 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 SMC4Q9NTJ3 1288 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 MSRAQ9UJ68 235 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 ASAP1Q9ULH1 1129 aa6.79□□□□□ -1.32
VPS53-219ENST00000576019 LRRFIP2Q9Y608 721 aaKnown RBP6.79□□□□□ -1.32
VPS53-219ENST00000576019 ZNF609O15014 1411 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 SHISA3A0PJX4 238 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 CAPN8A6NHC0 703 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 RHPN2P1A8MT19 583 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 H0YIN7 160 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 FIBPO43427 364 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 MGEA5O60502 916 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 AMY2AP04746 511 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 VSIG8P0DPA2 414 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 AMY2BP19961 511 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 RAB6AP20340 208 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 CD40P25942 277 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 TM4SF1P30408 202 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 GAS6Q14393 721 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 FSCN1Q16658 493 aaKnown RBP6.78□□□□□ -1.32
VPS53-219ENST00000576019 CCDC38Q502W7 563 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms