RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 GUCY2CP25092 1073 aa22.22■■□□□ 1.15
NUP88-204ENST00000572290 GTF2F1P35269 517 aaKnown RBP eCLIP22.22■■□□□ 1.15
NUP88-204ENST00000572290 AFF1P51825 1210 aaKnown RBP22.22■■□□□ 1.15
NUP88-204ENST00000572290 PEX3P56589 373 aa22.22■■□□□ 1.15
NUP88-204ENST00000572290 MAPK7Q13164 816 aa22.22■■□□□ 1.15
NUP88-204ENST00000572290 ZNF280BQ86YH2 543 aa22.22■■□□□ 1.15
NUP88-204ENST00000572290 ADAMTS19Q8TE59 1207 aa22.22■■□□□ 1.15
NUP88-204ENST00000572290 FAM193BQ96PV7 902 aaPredicted RBP22.22■■□□□ 1.15
NUP88-204ENST00000572290 NXF3Q9H4D5 531 aaKnown RBP22.22■■□□□ 1.15
NUP88-204ENST00000572290 GIT1Q9Y2X7 761 aa22.22■■□□□ 1.15
NUP88-204ENST00000572290 TTLL13PA6NNM8 815 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 FSCN2O14926 492 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 POMCP01189 267 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 GALTP07902 379 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 MARCKSP29966 332 aaPredicted RBP22.21■■□□□ 1.15
NUP88-204ENST00000572290 NPTX2P47972 431 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 SLC12A3P55017 1021 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 CEBPZQ03701 1054 aaKnown RBP22.21■■□□□ 1.15
NUP88-204ENST00000572290 DMP1Q13316 513 aaPredicted RBP22.21■■□□□ 1.15
NUP88-204ENST00000572290 CTC1Q2NKJ3 1217 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 RASSF8Q8NHQ8 419 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 TMEM169Q96HH4 297 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 GAD1Q99259 594 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 TCF25Q9BQ70 676 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 PDZD7Q9H5P4 517 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 C17orf75Q9HAS0 396 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 NGRNQ9NPE2 291 aaKnown RBP22.21■■□□□ 1.15
NUP88-204ENST00000572290 ENTPD7Q9NQZ7 604 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 KCND2Q9NZV8 630 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 DNAJB4Q9UDY4 337 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 FNDC1Q4ZHG4 1894 aaPredicted RBP22.21■■□□□ 1.15
NUP88-204ENST00000572290 XIRP2A4UGR9 3374 aa22.21■■□□□ 1.15
NUP88-204ENST00000572290 ARL5CA6NH57 179 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 H3BQ06 376 aaPredicted RBP22.2■■□□□ 1.14
NUP88-204ENST00000572290 K7ERI5 159 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 INPPL1O15357 1258 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 DDHD2O94830 711 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 MLH1P40692 756 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 NRIP1P48552 1158 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 SLC11A1P49279 550 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 RAD51AP2Q09MP3 1159 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 PLPP4Q5VZY2 271 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 TMC7Q7Z402 723 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 RBM23Q86U06 439 aaKnown RBP22.2■■□□□ 1.14
NUP88-204ENST00000572290 UHRF1Q96T88 793 aaPredicted RBP22.2■■□□□ 1.14
NUP88-204ENST00000572290 ADPGKQ9BRR6 497 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 TLE6Q9H808 572 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 KMT5AQ9NQR1 393 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 FBXO2Q9UK22 296 aaPredicted RBP22.2■■□□□ 1.14
NUP88-204ENST00000572290 USP20Q9Y2K6 914 aa22.2■■□□□ 1.14
NUP88-204ENST00000572290 SRPRBQ9Y5M8 271 aaKnown RBP22.2■■□□□ 1.14
NUP88-204ENST00000572290 REV3LO60673 3130 aa22.19■■□□□ 1.14
NUP88-204ENST00000572290 SFI1A8K8P3 1242 aa22.19■■□□□ 1.14
NUP88-204ENST00000572290 B4GALT3O60512 393 aa22.19■■□□□ 1.14
NUP88-204ENST00000572290 EDN1P05305 212 aa22.19■■□□□ 1.14
NUP88-204ENST00000572290 AKAP5P24588 427 aa22.19■■□□□ 1.14
NUP88-204ENST00000572290 ADAM15Q13444 863 aa22.19■■□□□ 1.14
NUP88-204ENST00000572290 KARSQ15046 597 aaKnown RBP22.19■■□□□ 1.14
NUP88-204ENST00000572290 TMEM173Q86WV6 379 aaPredicted RBP22.19■■□□□ 1.14
NUP88-204ENST00000572290 EFHBQ8N7U6 833 aa22.19■■□□□ 1.14
NUP88-204ENST00000572290 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.19■■□□□ 1.14
NUP88-204ENST00000572290 IGSF21Q96ID5 467 aa22.19■■□□□ 1.14
NUP88-204ENST00000572290 USP28Q96RU2 1077 aa22.19■■□□□ 1.14
NUP88-204ENST00000572290 TMEM175Q9BSA9 504 aa22.19■■□□□ 1.14
NUP88-204ENST00000572290 CCSER1Q9C0I3 900 aa22.19■■□□□ 1.14
NUP88-204ENST00000572290 TMEM134Q9H6X4 195 aa22.19■■□□□ 1.14
NUP88-204ENST00000572290 PARP2Q9UGN5 583 aa22.19■■□□□ 1.14
NUP88-204ENST00000572290 RBM19Q9Y4C8 960 aaKnown RBP22.19■■□□□ 1.14
NUP88-204ENST00000572290 PHLPP2Q6ZVD8 1323 aa22.18■■□□□ 1.14
NUP88-204ENST00000572290 LINC01565O15544 149 aa22.18■■□□□ 1.14
NUP88-204ENST00000572290 ALDH2P05091 517 aa22.18■■□□□ 1.14
NUP88-204ENST00000572290 PDIA4P13667 645 aaKnown RBP22.18■■□□□ 1.14
NUP88-204ENST00000572290 PLCG1P19174 1290 aa22.18■■□□□ 1.14
NUP88-204ENST00000572290 LTBRP36941 435 aa22.18■■□□□ 1.14
NUP88-204ENST00000572290 SCNN1GP51170 649 aa22.18■■□□□ 1.14
NUP88-204ENST00000572290 PUS10Q3MIT2 529 aaKnown RBP22.18■■□□□ 1.14
NUP88-204ENST00000572290 NT5DC1Q5TFE4 455 aa22.18■■□□□ 1.14
NUP88-204ENST00000572290 EEF1DP3Q658K8 133 aa22.18■■□□□ 1.14
NUP88-204ENST00000572290 ZFP42Q96MM3 310 aa22.18■■□□□ 1.14
NUP88-204ENST00000572290 CDCA3Q99618 268 aaPredicted RBP22.18■■□□□ 1.14
NUP88-204ENST00000572290 MIOSQ9NXC5 875 aa22.18■■□□□ 1.14
NUP88-204ENST00000572290 ARHGAP28Q9P2N2 729 aa22.18■■□□□ 1.14
NUP88-204ENST00000572290 DAXXQ9UER7 740 aaPredicted RBP22.18■■□□□ 1.14
NUP88-204ENST00000572290 KCNG1Q9UIX4 513 aa22.18■■□□□ 1.14
NUP88-204ENST00000572290 FAN1Q9Y2M0 1017 aa22.18■■□□□ 1.14
NUP88-204ENST00000572290 KIAA1671Q9BY89 1806 aa22.17■■□□□ 1.14
NUP88-204ENST00000572290 PER2O15055 1255 aa22.17■■□□□ 1.14
NUP88-204ENST00000572290 PLS3P13797 630 aa22.17■■□□□ 1.14
NUP88-204ENST00000572290 DLX2Q07687 328 aaPredicted RBP22.17■■□□□ 1.14
NUP88-204ENST00000572290 DHX8Q14562 1220 aaKnown RBP22.17■■□□□ 1.14
NUP88-204ENST00000572290 BMS1Q14692 1282 aaKnown RBP22.17■■□□□ 1.14
NUP88-204ENST00000572290 SLC39A14Q15043 492 aa22.17■■□□□ 1.14
NUP88-204ENST00000572290 ARSHQ5FYA8 562 aa22.17■■□□□ 1.14
NUP88-204ENST00000572290 SPECC1Q5M775 1068 aa22.17■■□□□ 1.14
NUP88-204ENST00000572290 ATF7IP2Q5U623 682 aa22.17■■□□□ 1.14
NUP88-204ENST00000572290 PTCRAQ6ISU1 281 aaPredicted RBP22.17■■□□□ 1.14
NUP88-204ENST00000572290 LRRC15Q8TF66 581 aa22.17■■□□□ 1.14
NUP88-204ENST00000572290 BCL7CQ8WUZ0 217 aaPredicted RBP22.17■■□□□ 1.14
NUP88-204ENST00000572290 SPIRE2Q8WWL2 714 aa22.17■■□□□ 1.14
NUP88-204ENST00000572290 RAD54LQ92698 747 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms