RNA–Protein interactions for RNA: ENST00000572043.5

CTDNEP1-207, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3 BASIC

Gene CTDNEP1, Length 857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-207ENST00000572043 HIP1RO75146 1068 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 GLP2RO95838 553 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 SCNN1GP51170 649 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 RAD51AP2Q09MP3 1159 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 PRPF4BQ13523 1007 aaKnown RBP19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 PPP2R5AQ15172 486 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 MAPK6Q16659 721 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 DUSP6Q16828 381 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 PUS10Q3MIT2 529 aaKnown RBP19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 PDE12Q6L8Q7 609 aaKnown RBP19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 PPP4R3CPQ6ZMV5 832 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 BRAPQ7Z569 592 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 VPS52Q8N1B4 723 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 VN1R2Q8NFZ6 395 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 AUTS2Q8WXX7 1259 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 RSPH1Q8WYR4 309 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 KIFAP3Q92845 792 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 IGSF21Q96ID5 467 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 CDK5RAP3Q96JB5 506 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 NGRNQ9NPE2 291 aaKnown RBP19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 UBN1Q9NPG3 1134 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 MIOSQ9NXC5 875 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 CLEC1BQ9P126 229 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 CD207Q9UJ71 328 aa19.64■□□□□ 0.73
CTDNEP1-207ENST00000572043 ARL5CA6NH57 179 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 EDN1P05305 212 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 PDCP20941 246 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 PEX3P56589 373 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 GRIN1Q05586 938 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 SMC1AQ14683 1233 aaKnown RBP19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 SF3A1Q15459 793 aaKnown RBP19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 ARL6IP4Q66PJ3 421 aaKnown RBP19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 RINT1Q6NUQ1 792 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 FAM173BQ6P4H8 233 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 CABP7Q86V35 215 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 HACE1Q8IYU2 909 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 PRIMPOLQ96LW4 560 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 CCDC113Q9H0I3 377 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 PDZD7Q9H5P4 517 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 CD320Q9NPF0 282 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 KANSL3Q9P2N6 904 aa19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 PRG3Q9Y2Y8 225 aaPredicted RBP19.63■□□□□ 0.73
CTDNEP1-207ENST00000572043 PLXNA4Q9HCM2 1894 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 XIRP2A4UGR9 3374 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 REV3LO60673 3130 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 SFI1A8K8P3 1242 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 MBTPS2O43462 519 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 CXCL14O95715 111 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 SYT1P21579 422 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 SSTR3P32745 418 aaPredicted RBP19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 OR1G1P47890 313 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 FAM187BQ17R55 369 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 FAM178BQ8IXR5 827 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 CDCA3Q99618 268 aaPredicted RBP19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 APOL5Q9BWW9 433 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 FAN1Q9Y2M0 1017 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 VCANP13611 3396 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 TRANK1O15050 2925 aa19.62■□□□□ 0.73
CTDNEP1-207ENST00000572043 TCF20Q9UGU0 1960 aaKnown RBP19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 C2orf71A6NGG8 1288 aa19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 ACKR2O00590 384 aa19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 NRP1O14786 923 aa19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 N4BP3O15049 544 aa19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 ALDH2P05091 517 aa19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 CEBPZQ03701 1054 aaKnown RBP19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 SMAD4Q13485 552 aaKnown RBP19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 EEF1DP3Q658K8 133 aa19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 C1orf186Q6ZWK4 172 aa19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 DAW1Q8N136 415 aa19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 MRPL43Q8N983 215 aaKnown RBP19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 MSLNLQ96KJ4 702 aa19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 FAM50BQ9Y247 325 aa19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 GIT1Q9Y2X7 761 aa19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 CLIC4Q9Y696 253 aa19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 ATG2AQ2TAZ0 1938 aa19.61■□□□□ 0.73
CTDNEP1-207ENST00000572043 PLA2G4BP0C869 781 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 NPTX2P47972 431 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 CACNB1Q02641 598 aaPredicted RBP19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 RESTQ13127 1097 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 DMP1Q13316 513 aaPredicted RBP19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 BMS1Q14692 1282 aaKnown RBP19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 HYIQ5T013 277 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 DDX53Q86TM3 631 aaKnown RBP19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 COLGALT2Q8IYK4 626 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 GJD3Q8N144 294 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 TMEM87AQ8NBN3 555 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 RASSF8Q8NHQ8 419 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 RABGGTAQ92696 567 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 INTS4Q96HW7 963 aaKnown RBP19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 DRC1Q96MC2 740 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 RPS6KC1Q96S38 1066 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 TMEM175Q9BSA9 504 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 VN1R3Q9BXE9 311 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 NT5C3AQ9H0P0 336 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 ZBP1Q9H171 429 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 SNTG2Q9NY99 539 aa19.6■□□□□ 0.73
CTDNEP1-207ENST00000572043 A0A0C4DFX4 3053 aa19.59■□□□□ 0.73
CTDNEP1-207ENST00000572043 NPHP3-ACAD11A0A0J9YXS1 232 aa19.59■□□□□ 0.73
CTDNEP1-207ENST00000572043 F8W810 466 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms