RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 MAK16Q9BXY0 300 aaKnown RBP12.18□□□□□ -0.46
CLN3-238ENST00000569430 KLHL11Q9NVR0 708 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 UBAP1LF5GYI3 381 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 ASAP2O43150 1006 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 DNAJC8O75937 253 aaPredicted RBP12.18□□□□□ -0.46
CLN3-238ENST00000569430 ATP5HO75947 161 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 FOSP01100 380 aaPredicted RBP12.18□□□□□ -0.46
CLN3-238ENST00000569430 MT-ND3P03897 115 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 GSTA1P08263 222 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 MAN1A1P33908 653 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 PHBP35232 272 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 COILP38432 576 aaPredicted RBP12.18□□□□□ -0.46
CLN3-238ENST00000569430 ITGA8P53708 1063 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 ANKRD20A2Q5SQ80 823 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 RBM26Q5T8P6 1007 aaKnown RBP12.18□□□□□ -0.46
CLN3-238ENST00000569430 ANKRD20A1Q5TYW2 823 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 C3orf67Q6ZVT6 689 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 FBXO33Q7Z6M2 555 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 CATSPER3Q86XQ3 398 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.18□□□□□ -0.46
CLN3-238ENST00000569430 SNF8Q96H20 258 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 NACC1Q96RE7 527 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 TRABDQ9H4I3 376 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 STK24Q9Y6E0 443 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 SLIT3O75094 1523 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 EP400Q96L91 3159 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 PI4K2BG5E9Z4 385 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 HAUS5O94927 633 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 RANBP1P43487 201 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 GSCP56915 257 aaPredicted RBP12.17□□□□□ -0.46
CLN3-238ENST00000569430 ORC2Q13416 577 aaPredicted RBP12.17□□□□□ -0.46
CLN3-238ENST00000569430 LRRC36Q1X8D7 754 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 LRRC23Q53EV4 343 aaPredicted RBP12.17□□□□□ -0.46
CLN3-238ENST00000569430 SCFD2Q8WU76 684 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 TEKT4Q8WW24 435 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 FAM161BQ96MY7 647 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 RBM15Q96T37 977 aaKnown RBP eCLIP12.17□□□□□ -0.46
CLN3-238ENST00000569430 WNT8AQ9H1J5 351 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 GINM1Q9NU53 330 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 PPARGC1AQ9UBK2 798 aaKnown RBP12.17□□□□□ -0.46
CLN3-238ENST00000569430 CTNNAL1Q9UBT7 734 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 PITPNM2Q9BZ72 1349 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 hCG_2014768A0A024R1R8 64 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 A8MUI8 341 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 NTSR2O95665 410 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 INHBAP08476 426 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 OVGP1Q12889 678 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 BSPRYQ5W0U4 402 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 TRMT10CQ7L0Y3 403 aaKnown RBP12.17□□□□□ -0.46
CLN3-238ENST00000569430 ZBED8Q8IZ13 594 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 PYROXD1Q8WU10 500 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 C8orf37Q96NL8 207 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 EIF2AK1Q9BQI3 630 aaKnown RBP12.17□□□□□ -0.46
CLN3-238ENST00000569430 FGFBP2Q9BYJ0 223 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 METTL5Q9NRN9 209 aaKnown RBP12.17□□□□□ -0.46
CLN3-238ENST00000569430 MTMR4Q9NYA4 1195 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 EXOC7Q9UPT5 735 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 NR2E1Q9Y466 385 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 RARGP13631 454 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 HOXA7P31268 230 aaPredicted RBP12.17□□□□□ -0.46
CLN3-238ENST00000569430 MDH1BQ5I0G3 518 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 ANKMY2Q8IV38 441 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 SLC20A1Q8WUM9 679 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 KRT35Q92764 455 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 ARHGEF26Q96DR7 871 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 C11orf70Q9BRQ4 267 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 TRIM55Q9BYV6 548 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 VCX3BQ9H321 246 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 ZFATQ9P243 1243 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 GGA2Q9UJY4 613 aa12.17□□□□□ -0.46
CLN3-238ENST00000569430 FAM47DPA6NHR8 397 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 FOXO6A8MYZ6 492 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 SNX3O60493 162 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 PFDN1O60925 122 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 CAMTA2O94983 1202 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 KITP10721 976 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 CASP5P51878 434 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 BASP1P80723 227 aaKnown RBP12.16□□□□□ -0.46
CLN3-238ENST00000569430 KCNA1Q09470 495 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 GPS1Q13098 491 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 PSMD6Q15008 389 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 CASC4Q6P4E1 433 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 MIPOL1Q8TD10 442 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 CCT6BQ92526 530 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 JMJD4Q9H9V9 463 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 TXNDC16Q9P2K2 825 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 HNRNPDLO14979 420 aaKnown RBP12.16□□□□□ -0.46
CLN3-238ENST00000569430 KRT1P04264 644 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 GNAT1P11488 350 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 CPA2P48052 419 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 VAMP7P51809 220 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 XRCC4Q13426 336 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 FAM98CQ17RN3 349 aaKnown RBP12.16□□□□□ -0.46
CLN3-238ENST00000569430 THEMIS2Q5TEJ8 643 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 SLC13A5Q86YT5 568 aaPredicted RBP12.16□□□□□ -0.46
CLN3-238ENST00000569430 FGD4Q96M96 766 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 POP1Q99575 1024 aaKnown RBP12.16□□□□□ -0.46
CLN3-238ENST00000569430 NVLO15381 856 aaKnown RBP12.16□□□□□ -0.46
CLN3-238ENST00000569430 POLR2MP0CAP2 368 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 CD58P19256 250 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms