RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SFMBT2Q5VUG0 894 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 CNNM4Q6P4Q7 775 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 ZNF662Q6ZS27 426 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 RALYLQ86SE5 291 aaKnown RBP3.68□□□□□ -1.82
VPS35-208ENST00000568612 ERC1Q8IUD2 1116 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 NOSTRINQ8IVI9 506 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 IFNL2Q8IZJ0 200 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 KLHL36Q8N4N3 616 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 EXOC6Q8TAG9 804 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 MIPOL1Q8TD10 442 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 TBC1D5Q92609 795 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 PMM1Q92871 262 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 WNK4Q96J92 1243 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 LOXL4Q96JB6 756 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 FAM81BQ96LP2 452 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 BOCQ9BWV1 1114 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 SEZ6LQ9BYH1 1024 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 PDGFDQ9GZP0 370 aaPredicted RBP3.68□□□□□ -1.82
VPS35-208ENST00000568612 NACA2Q9H009 215 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 PCIF1Q9H4Z3 704 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 QPCTLQ9NXS2 382 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 GALNT8Q9NY28 637 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 HOXC10Q9NYD6 342 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 PSD3Q9NYI0 1048 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 SPATA7Q9P0W8 599 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 ODF2LQ9ULJ1 636 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 ATP8A1Q9Y2Q0 1164 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 N6AMT1Q9Y5N5 214 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 LRRFIP2Q9Y608 721 aaKnown RBP3.68□□□□□ -1.82
VPS35-208ENST00000568612 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.68□□□□□ -1.82
VPS35-208ENST00000568612 V9GYY5 206 aaPredicted RBP3.68□□□□□ -1.82
VPS35-208ENST00000568612 NCANO14594 1321 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 PTPRCP08575 1304 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 PTPDC1A2A3K4 754 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 NPEPPSL1A6NEC2 478 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 KRTAP9-7A8MTY7 169 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 H7C1D1 291 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 LAMTOR5O43504 91 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 B4GALT3O60512 393 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 KPNA6O60684 536 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 RTN2O75298 545 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 CDC45O75419 566 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 E2F6O75461 281 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 ERLIN1O75477 346 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 RPS6KA5O75582 802 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 KRT38O76015 456 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 KLHL18O94889 574 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 PLATP00750 562 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 CHGBP05060 677 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 CYP11B2P19099 503 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 KCNQ1P51787 676 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 CCNHP51946 323 aaPredicted RBP3.67□□□□□ -1.82
VPS35-208ENST00000568612 MNAT1P51948 309 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 HERVK_113P62684 666 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 IL13RA1P78552 427 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 POU5F1Q01860 360 aaKnown RBP3.67□□□□□ -1.82
VPS35-208ENST00000568612 SURF1Q15526 300 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 KLHL40Q2TBA0 621 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 NBPF8Q3BBV2 869 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 KBTBD12Q3ZCT8 623 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 PREPLQ4J6C6 727 aaPredicted RBP3.67□□□□□ -1.82
VPS35-208ENST00000568612 CDCA2Q69YH5 1023 aaPredicted RBP3.67□□□□□ -1.82
VPS35-208ENST00000568612 LRSAM1Q6UWE0 723 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 GLB1LQ6UWU2 654 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 GBP6Q6ZN66 633 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 CLEC17AQ6ZS10 378 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 Q6ZUG5 572 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 C16orf86Q6ZW13 317 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 CCDC80Q76M96 950 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 CENPQQ7L2Z9 268 aaPredicted RBP3.67□□□□□ -1.82
VPS35-208ENST00000568612 LIMS2Q7Z4I7 341 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 PRRT2Q7Z6L0 340 aaPredicted RBP3.67□□□□□ -1.82
VPS35-208ENST00000568612 SDCCAG8Q86SQ7 713 aaPredicted RBP3.67□□□□□ -1.82
VPS35-208ENST00000568612 HSCBQ8IWL3 235 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 MYO1HQ8N1T3 1032 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 CHST14Q8NCH0 376 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 C3orf20Q8ND61 904 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 C1orf131Q8NDD1 294 aaKnown RBP3.67□□□□□ -1.82
VPS35-208ENST00000568612 VPS37AQ8NEZ2 397 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 NEK11Q8NG66 645 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 GIMAP1Q8WWP7 306 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 ASB15Q8WXK1 588 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 SNX21Q969T3 373 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 CCDC47Q96A33 483 aaKnown RBP3.67□□□□□ -1.82
VPS35-208ENST00000568612 NACC2Q96BF6 587 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 SCLT1Q96NL6 688 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 SENP7Q9BQF6 1050 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 MMADHCQ9H3L0 296 aaPredicted RBP3.67□□□□□ -1.82
VPS35-208ENST00000568612 HOMER3Q9NSC5 361 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 TBC1D7Q9P0N9 293 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 CLIP2Q9UDT6 1046 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 SWAP70Q9UH65 585 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 CDC42EP3Q9UKI2 254 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 SETD5Q9C0A6 1442 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 THOC2Q8NI27 1593 aaKnown RBP3.67□□□□□ -1.82
VPS35-208ENST00000568612 EVC2Q86UK5 1308 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 GOLGA3Q08378 1498 aa3.67□□□□□ -1.82
VPS35-208ENST00000568612 EIF3AQ14152 1382 aaKnown RBP3.66□□□□□ -1.82
VPS35-208ENST00000568612 PLEKHH1Q9ULM0 1364 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 ZMYM4Q5VZL5 1548 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms