RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PRIMPOLQ96LW4 560 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 USP28Q96RU2 1077 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 NRDE2Q9H7Z3 1164 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 RSAD1Q9HA92 442 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 PRMT7Q9NVM4 692 aaPredicted RBP16.6■□□□□ 0.25
VPS39-210ENST00000568357 FBXO2Q9UK22 296 aaPredicted RBP16.6■□□□□ 0.25
VPS39-210ENST00000568357 RALGAPA2Q2PPJ7 1873 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 FNDC1Q4ZHG4 1894 aaPredicted RBP16.6■□□□□ 0.25
VPS39-210ENST00000568357 NLRC5Q86WI3 1866 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 NPHP3-ACAD11A0A0J9YXS1 232 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 NT5C1B-RDH14C9J2C7 533 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 ACKR2O00590 384 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 SLC26A4O43511 780 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 DDHD2O94830 711 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 NPTXRO95502 500 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 ITGA4P13612 1032 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 SSTR3P32745 418 aaPredicted RBP16.59■□□□□ 0.25
VPS39-210ENST00000568357 NPTX2P47972 431 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 PEX3P56589 373 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 BCAR1P56945 870 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 UBE3AQ05086 875 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 HYAL1Q12794 435 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 PRPF4BQ13523 1007 aaKnown RBP16.59■□□□□ 0.25
VPS39-210ENST00000568357 COL19A1Q14993 1142 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 KARSQ15046 597 aaKnown RBP16.59■□□□□ 0.25
VPS39-210ENST00000568357 MAPK6Q16659 721 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 ARSHQ5FYA8 562 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 SLC27A1Q6PCB7 646 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 ADGRD2Q7Z7M1 963 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 SLC39A11Q8N1S5 342 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 MICAL1Q8TDZ2 1067 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 MRPS27Q92552 414 aaKnown RBP16.59■□□□□ 0.25
VPS39-210ENST00000568357 CALML4Q96GE6 196 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 EPSTI1Q96J88 318 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 CLIC6Q96NY7 704 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 NXF3Q9H4D5 531 aaKnown RBP16.59■□□□□ 0.25
VPS39-210ENST00000568357 UBE2ZQ9H832 354 aaPredicted RBP16.59■□□□□ 0.25
VPS39-210ENST00000568357 BLOC1S4Q9NUP1 217 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 SPG21Q9NZD8 308 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 SRPRBQ9Y5M8 271 aaKnown RBP16.59■□□□□ 0.25
VPS39-210ENST00000568357 CNTNAP2Q9UHC6 1331 aa16.59■□□□□ 0.25
VPS39-210ENST00000568357 CCDC169A6NNP5 214 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 ZC3H11AO75152 810 aaKnown RBP eCLIP16.58■□□□□ 0.24
VPS39-210ENST00000568357 POMCP01189 267 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 PRKCBP05771 671 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 HSP90AA1P07900 732 aaKnown RBP16.58■□□□□ 0.24
VPS39-210ENST00000568357 GALTP07902 379 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 AKAP5P24588 427 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 GUCY2CP25092 1073 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 ALDH7A1P49419 539 aaKnown RBP16.58■□□□□ 0.24
VPS39-210ENST00000568357 EFNA5P52803 228 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 SLC39A14Q15043 492 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 NT5DC1Q5TFE4 455 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 FOXD4L5Q5VV16 416 aaPredicted RBP16.58■□□□□ 0.24
VPS39-210ENST00000568357 TMEM173Q86WV6 379 aaPredicted RBP16.58■□□□□ 0.24
VPS39-210ENST00000568357 FOXD4L4Q8WXT5 416 aaPredicted RBP16.58■□□□□ 0.24
VPS39-210ENST00000568357 RSPH1Q8WYR4 309 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 GAD1Q99259 594 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 APOL6Q9BWW8 343 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 TRIM6Q9C030 488 aaPredicted RBP16.58■□□□□ 0.24
VPS39-210ENST00000568357 CCSER1Q9C0I3 900 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 GBP3Q9H0R5 595 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 PDZD7Q9H5P4 517 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 IGFLR1Q9H665 355 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 UBN1Q9NPG3 1134 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 MIOSQ9NXC5 875 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 DNAJB4Q9UDY4 337 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 LZTS1Q9Y250 596 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 ZNF318Q5VUA4 2279 aa16.58■□□□□ 0.24
VPS39-210ENST00000568357 ARL5CA6NH57 179 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 K7ERI5 159 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 FSCN2O14926 492 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 PLCG1P19174 1290 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 KCNA5P22460 613 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 PPM1AP35813 382 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 LTBRP36941 435 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 KRT17Q04695 432 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 RNASELQ05823 741 aaKnown RBP16.57■□□□□ 0.24
VPS39-210ENST00000568357 DHX8Q14562 1220 aaKnown RBP16.57■□□□□ 0.24
VPS39-210ENST00000568357 CTC1Q2NKJ3 1217 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 EEF1DP3Q658K8 133 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 GSTCDQ8NEC7 633 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.57■□□□□ 0.24
VPS39-210ENST00000568357 URGCPQ8TCY9 931 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 PABPC5Q96DU9 382 aaKnown RBP16.57■□□□□ 0.24
VPS39-210ENST00000568357 DRC1Q96MC2 740 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 ZFP42Q96MM3 310 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 PHOX2BQ99453 314 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 NTPCRQ9BSD7 190 aaKnown RBP16.57■□□□□ 0.24
VPS39-210ENST00000568357 TIPINQ9BVW5 301 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 TLR9Q9NR96 1032 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 KANSL3Q9P2N6 904 aa16.57■□□□□ 0.24
VPS39-210ENST00000568357 TFIP11Q9UBB9 837 aaKnown RBP16.57■□□□□ 0.24
VPS39-210ENST00000568357 PUF60Q9UHX1 559 aaKnown RBP16.57■□□□□ 0.24
VPS39-210ENST00000568357 KIAA1671Q9BY89 1806 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 INPPL1O15357 1258 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 LINC01565O15544 149 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 ALADP13716 330 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 MLH1P40692 756 aa16.56■□□□□ 0.24
VPS39-210ENST00000568357 SLC11A1P49279 550 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms