RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 HPSEQ9Y251 543 aa14.8□□□□□ -0.04
CLK3-218ENST00000566926 TCHHQ07283 1943 aa14.8□□□□□ -0.04
CLK3-218ENST00000566926 SSBP05455 408 aaKnown RBP eCLIP14.79□□□□□ -0.04
CLK3-218ENST00000566926 ITGA4P13612 1032 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 PFKFB1P16118 471 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 ARF4P18085 180 aaPredicted RBP14.79□□□□□ -0.04
CLK3-218ENST00000566926 LIG1P18858 919 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 GUCY2CP25092 1073 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 DMP1Q13316 513 aaPredicted RBP14.79□□□□□ -0.04
CLK3-218ENST00000566926 AMHR2Q16671 573 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 TMEM132AQ24JP5 1023 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 TMEM119Q4V9L6 283 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 NOMO2Q5JPE7 1267 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 KANK3Q6NY19 840 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 SLC27A1Q6PCB7 646 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 C1orf186Q6ZWK4 172 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 THNSL1Q8IYQ7 743 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 FMR1NBQ8N0W7 255 aaPredicted RBP14.79□□□□□ -0.04
CLK3-218ENST00000566926 ENGASEQ8NFI3 743 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 ZNF558Q96NG5 402 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 CCSER1Q9C0I3 900 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 FZD8Q9H461 694 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 CLSTN2Q9H4D0 955 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 NSUN3Q9H649 340 aaKnown RBP14.79□□□□□ -0.04
CLK3-218ENST00000566926 RSAD1Q9HA92 442 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 CCDC39Q9UFE4 941 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 PUF60Q9UHX1 559 aaKnown RBP14.79□□□□□ -0.04
CLK3-218ENST00000566926 KCNH3Q9ULD8 1083 aa14.79□□□□□ -0.04
CLK3-218ENST00000566926 TRIP11Q15643 1979 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 PRUNE2Q8WUY3 3088 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 A0A1B0GUA9 196 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 K7ERI5 159 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 N4BP3O15049 544 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 GRM6O15303 877 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 NCK2O43639 380 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 HIP1RO75146 1068 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 NR1I2O75469 434 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 ITGB1P05556 798 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 PRKCBP05771 671 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 PLA2G4BP0C869 781 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 ALDH7A1P49419 539 aaKnown RBP14.78□□□□□ -0.04
CLK3-218ENST00000566926 NDUFA8P51970 172 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 ZNF445P59923 1031 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 MRPS5P82675 430 aaKnown RBP14.78□□□□□ -0.04
CLK3-218ENST00000566926 KRT17Q04695 432 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 RNASELQ05823 741 aaKnown RBP14.78□□□□□ -0.04
CLK3-218ENST00000566926 PRPF4BQ13523 1007 aaKnown RBP14.78□□□□□ -0.04
CLK3-218ENST00000566926 SNW1Q13573 536 aaKnown RBP14.78□□□□□ -0.04
CLK3-218ENST00000566926 ZSCAN23Q3MJ62 389 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 UBXN11Q5T124 520 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 PDE12Q6L8Q7 609 aaKnown RBP14.78□□□□□ -0.04
CLK3-218ENST00000566926 KCNT2Q6UVM3 1135 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 KCNK18Q7Z418 384 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 APBB1IPQ7Z5R6 666 aaPredicted RBP14.78□□□□□ -0.04
CLK3-218ENST00000566926 SPPL3Q8TCT6 385 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 POF1BQ8WVV4 589 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 LPPQ93052 612 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 HLA-CQ95604 372 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 CPB2Q96IY4 423 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 CLIC6Q96NY7 704 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 PLIN2Q99541 437 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 ADPGKQ9BRR6 497 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 TNMDQ9H2S6 317 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 ALG13Q9NP73 1137 aaKnown RBP14.78□□□□□ -0.04
CLK3-218ENST00000566926 TMEM63CQ9P1W3 806 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 LZTS1Q9Y250 596 aa14.78□□□□□ -0.04
CLK3-218ENST00000566926 CITO14578 2027 aa14.77□□□□□ -0.04
CLK3-218ENST00000566926 A0A1B0GVL5 298 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 CCDC169A6NNP5 214 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 ACKR2O00590 384 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 OFD1O75665 1012 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 FGF18O76093 207 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 SMTNP53814 917 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 SLC12A3P55017 1021 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 PEX3P56589 373 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 PLCB3Q01970 1234 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 LRRC55Q6ZSA7 311 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 BSNDQ8WZ55 320 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 SYMPKQ92797 1274 aaKnown RBP14.77□□□□□ -0.05
CLK3-218ENST00000566926 FAM193BQ96PV7 902 aaPredicted RBP14.77□□□□□ -0.05
CLK3-218ENST00000566926 RUSC1Q9BVN2 902 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 GOLPH3LQ9H4A5 285 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 SPG21Q9NZD8 308 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 INPP5FQ9Y2H2 1132 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 GIT1Q9Y2X7 761 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 IPPQ9Y573 584 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 EYSQ5T1H1 3165 aa14.77□□□□□ -0.05
CLK3-218ENST00000566926 ZMYM2Q9UBW7 1377 aa14.76□□□□□ -0.05
CLK3-218ENST00000566926 H0YCG3 227 aa14.76□□□□□ -0.05
CLK3-218ENST00000566926 B4GALT5O43286 388 aa14.76□□□□□ -0.05
CLK3-218ENST00000566926 ZNF202O95125 648 aa14.76□□□□□ -0.05
CLK3-218ENST00000566926 BMS1Q14692 1282 aaKnown RBP14.76□□□□□ -0.05
CLK3-218ENST00000566926 LONRF3Q496Y0 759 aa14.76□□□□□ -0.05
CLK3-218ENST00000566926 AGMOQ6ZNB7 445 aa14.76□□□□□ -0.05
CLK3-218ENST00000566926 RBM43Q6ZSC3 357 aaKnown RBP14.76□□□□□ -0.05
CLK3-218ENST00000566926 IQUBQ8NA54 791 aa14.76□□□□□ -0.05
CLK3-218ENST00000566926 SMG8Q8ND04 991 aaKnown RBP14.76□□□□□ -0.05
CLK3-218ENST00000566926 EIF2AQ9BY44 585 aaKnown RBP14.76□□□□□ -0.05
CLK3-218ENST00000566926 CCDC113Q9H0I3 377 aa14.76□□□□□ -0.05
CLK3-218ENST00000566926 TMEM134Q9H6X4 195 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms