RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	USP17L17	D6RBQ6	530 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	USP17L19	D6RCP7	530 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	USP17L20	D6RJB6	530 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	PDLIM1	O00151	329 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	PGRMC1	O00264	195 aa	Known RBP	11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	CXCL11	O14625	94 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	UBOX5	O94941	541 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	GJA5	P36382	358 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	USP11	P51784	963 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	COPS2	P61201	443 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	USP17L24	Q0WX57	530 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	COG2	Q14746	738 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	NONO	Q15233	471 aa	Known RBP eCLIP	11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	FAM133B	Q5BKY9	247 aa	Known RBP	11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	C10orf76	Q5T2E6	689 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	CST9	Q5W186	159 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	USP17L6P	Q6QN14	398 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	CATSPERG	Q6ZRH7	1159 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	KRT25	Q7Z3Z0	450 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	PRRT2	Q7Z6L0	340 aa	Predicted RBP	11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	LMNTD2	Q8IXW0	634 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	SLC38A10	Q9HBR0	1119 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	FAM207A	Q9NSI2	230 aa	Predicted RBP	11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	IRAK4	Q9NWZ3	460 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	RGL1	Q9NZL6	768 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	ADAM22	Q9P0K1	906 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	PNMA2	Q9UL42	364 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	KCNH4	Q9UQ05	1017 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	SSUH2	Q9Y2M2	353 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	ZNF536	O15090	1300 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	VWA5A	O00534	786 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	EVI5	O60447	810 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	SNX3	O60493	162 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	ZBED4	O75132	1171 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	KIF4A	O95239	1232 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	AGT	P01019	485 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	ICAM1	P05362	532 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	GNAT1	P11488	350 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	MCM7	P33993	719 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	MSH2	P43246	934 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	PDE6C	P51160	858 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	DHX9	Q08211	1270 aa	Known RBP	11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	EHHADH	Q08426	723 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	CENPP	Q6IPU0	288 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	ASRGL1	Q7L266	308 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	RPUSD2	Q8IZ73	545 aa	Known RBP	11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	CFAP61	Q8NHU2	1237 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	MDM1	Q8TC05	714 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	KLHL29	Q96CT2	875 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	BICD1	Q96G01	975 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	C7orf25	Q9BPX7	421 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	ELAC2	Q9BQ52	826 aa	Known RBP	11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	STMN4	Q9H169	189 aa	Predicted RBP	11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	ADAM7	Q9H2U9	754 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	MMRN2	Q9H8L6	949 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	HOMER2	Q9NSB8	354 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	RYDEN	Q9NUL5	291 aa	Known RBP	11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	ABCF3	Q9NUQ8	709 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	CEP72	Q9P209	647 aa		11.92	□□□□□ -0.5
TCF4-222	ENST00000564228	CCDC169	A6NNP5	214 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	SMIM24	O75264	130 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	CFB	P00751	764 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	ALAS1	P13196	640 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	ALDH3A1	P30838	453 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	HOXA13	P31271	388 aa	Predicted RBP	11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	GBP1	P32455	592 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	DSG3	P32926	999 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	PDIA5	Q14554	519 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	SLC18A3	Q16572	532 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	TBC1D25	Q3MII6	688 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	TDRD12	Q587J7	1177 aa	Known RBP	11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	CNNM4	Q6P4Q7	775 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	TBCK	Q8TEA7	893 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	DTNBP1	Q96EV8	351 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	RAB3IP	Q96QF0	476 aa	Predicted RBP	11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	TMEM109	Q9BVC6	243 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	GLT8D2	Q9H1C3	349 aa		11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	INTS9	Q9NV88	658 aa	Known RBP	11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	USP15	Q9Y4E8	981 aa	Predicted RBP	11.91	□□□□□ -0.5
TCF4-222	ENST00000564228	UNCX	A6NJT0	531 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	LAD1	O00515	517 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	KCNK3	O14649	394 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	MEIS2	O14770	477 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	DAPK3	O43293	454 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	CAND2	O75155	1236 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	SUN1	O94901	812 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	KRT16	P08779	473 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	GNAZ	P19086	355 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	KLRC1	P26715	233 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	CLK2	P49760	499 aa	Known RBP	11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	MXRA7	P84157	204 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	PDE4D	Q08499	809 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	SNAPC2	Q13487	334 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	SNX1	Q13596	522 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	PPP2R5E	Q16537	467 aa		11.9	□□□□□ -0.5
TCF4-222	ENST00000564228	LETM2	Q2VYF4	491 aa		11.9	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms