RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 USP20Q9Y2K6 914 aa17.31■□□□□ 0.36
VPS39-203ENST00000561797 A0A1B0GUA9 196 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 TTLL13PA6NNM8 815 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 HIDE1A8MVS5 230 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 SSBP05455 408 aaKnown RBP eCLIP17.3■□□□□ 0.36
VPS39-203ENST00000561797 PRKCBP05771 671 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 SYT1P21579 422 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 AKAP5P24588 427 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 SLC11A1P49279 550 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 RBM10P98175 930 aaKnown RBP17.3■□□□□ 0.36
VPS39-203ENST00000561797 PRPF4BQ13523 1007 aaKnown RBP17.3■□□□□ 0.36
VPS39-203ENST00000561797 SF3A1Q15459 793 aaKnown RBP17.3■□□□□ 0.36
VPS39-203ENST00000561797 MAPK6Q16659 721 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 PUS10Q3MIT2 529 aaKnown RBP17.3■□□□□ 0.36
VPS39-203ENST00000561797 PPP4R3CPQ6ZMV5 832 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 TMEM173Q86WV6 379 aaPredicted RBP17.3■□□□□ 0.36
VPS39-203ENST00000561797 CDK5RAP3Q96JB5 506 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 PRIMPOLQ96LW4 560 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 GAD1Q99259 594 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 RUSC1Q9BVN2 902 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 KANSL3Q9P2N6 904 aa17.3■□□□□ 0.36
VPS39-203ENST00000561797 ARL5CA6NH57 179 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 CCDC169A6NNP5 214 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 HIP1RO75146 1068 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 MLH1P40692 756 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 DUSP6Q16828 381 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 FAM187BQ17R55 369 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 RINT1Q6NUQ1 792 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 CABP7Q86V35 215 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 HACE1Q8IYU2 909 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 BCL7CQ8WUZ0 217 aaPredicted RBP17.29■□□□□ 0.36
VPS39-203ENST00000561797 INTS4Q96HW7 963 aaKnown RBP17.29■□□□□ 0.36
VPS39-203ENST00000561797 IGSF21Q96ID5 467 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 ZFP42Q96MM3 310 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 CCDC113Q9H0I3 377 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 NT5C3AQ9H0P0 336 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 NGRNQ9NPE2 291 aaKnown RBP17.29■□□□□ 0.36
VPS39-203ENST00000561797 MIOSQ9NXC5 875 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 KLK14Q9P0G3 267 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 PARP2Q9UGN5 583 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 CD207Q9UJ71 328 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 BARX2Q9UMQ3 279 aaPredicted RBP17.29■□□□□ 0.36
VPS39-203ENST00000561797 FAN1Q9Y2M0 1017 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 CITO14578 2027 aa17.29■□□□□ 0.36
VPS39-203ENST00000561797 N4BP3O15049 544 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 GLP2RO95838 553 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 BMP15O95972 392 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 ALDH2P05091 517 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 EDN1P05305 212 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 SCNN1GP51170 649 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 PEX3P56589 373 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 RAD51AP2Q09MP3 1159 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 SMC1AQ14683 1233 aaKnown RBP17.28■□□□□ 0.36
VPS39-203ENST00000561797 HYIQ5T013 277 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 C1orf186Q6ZWK4 172 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 FAM178BQ8IXR5 827 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 VPS52Q8N1B4 723 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 PDZD7Q9H5P4 517 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 CLEC1BQ9P126 229 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 FAM50BQ9Y247 325 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 GIT1Q9Y2X7 761 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 CLIC4Q9Y696 253 aa17.28■□□□□ 0.36
VPS39-203ENST00000561797 NCOR1O75376 2440 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 CARNS1A5YM72 827 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 SFI1A8K8P3 1242 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 K7ERI5 159 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 ACKR2O00590 384 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 NRP1O14786 923 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 MBTPS2O43462 519 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 CXCL14O95715 111 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 UBA7P41226 1012 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 EFNA5P52803 228 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 GRIN1Q05586 938 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 RESTQ13127 1097 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 BMS1Q14692 1282 aaKnown RBP17.27■□□□□ 0.36
VPS39-203ENST00000561797 LLGL2Q6P1M3 1020 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 FAM173BQ6P4H8 233 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 DDX53Q86TM3 631 aaKnown RBP17.27■□□□□ 0.36
VPS39-203ENST00000561797 DAW1Q8N136 415 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 VN1R2Q8NFZ6 395 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 AUTS2Q8WXX7 1259 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 MSLNLQ96KJ4 702 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 DRC1Q96MC2 740 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 CDCA3Q99618 268 aaPredicted RBP17.27■□□□□ 0.36
VPS39-203ENST00000561797 TMEM175Q9BSA9 504 aa17.27■□□□□ 0.36
VPS39-203ENST00000561797 TTC28Q96AY4 2481 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 C2orf71A6NGG8 1288 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 PLA2G4BP0C869 781 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 OR1G1P47890 313 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 NPTX2P47972 431 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 MAPK7Q13164 816 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 DHX8Q14562 1220 aaKnown RBP17.26■□□□□ 0.35
VPS39-203ENST00000561797 TMEM119Q4V9L6 283 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 EEF1DP3Q658K8 133 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 MRPL43Q8N983 215 aaKnown RBP17.26■□□□□ 0.35
VPS39-203ENST00000561797 SYT2Q8N9I0 419 aaPredicted RBP17.26■□□□□ 0.35
VPS39-203ENST00000561797 CALML4Q96GE6 196 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 AK8Q96MA6 479 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 ADPGKQ9BRR6 497 aa17.26■□□□□ 0.35
VPS39-203ENST00000561797 ZBP1Q9H171 429 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms