RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 POLR2FP61218 127 aaKnown RBP23.16■■□□□ 1.3
CLN3-209ENST00000561689 C1orf220Q5T0J3 134 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 WDR59Q6PJI9 974 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 RRAGAQ7L523 313 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 CACNA2D4Q7Z3S7 1137 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 CHP1Q99653 195 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 INO80BQ9C086 356 aaPredicted RBP23.16■■□□□ 1.3
CLN3-209ENST00000561689 PSEN2P49810 448 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 PTENP60484 403 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 PPP3CAQ08209 521 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 GPIHBP1Q8IV16 184 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 BAP1Q92560 729 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 MRPL4Q9BYD3 311 aaKnown RBP23.16■■□□□ 1.3
CLN3-209ENST00000561689 MINDY3Q9H8M7 445 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 SRRDQ9UH36 339 aa23.16■■□□□ 1.3
CLN3-209ENST00000561689 AGO2Q9UKV8 859 aaKnown RBP23.16■■□□□ 1.3
CLN3-209ENST00000561689 HTTP42858 3142 aa23.15■■□□□ 1.3
CLN3-209ENST00000561689 GTPBP10A4D1E9 387 aaKnown RBP23.15■■□□□ 1.3
CLN3-209ENST00000561689 OFD1O75665 1012 aa23.15■■□□□ 1.3
CLN3-209ENST00000561689 PGK1P00558 417 aa23.15■■□□□ 1.3
CLN3-209ENST00000561689 SLFN12LQ6IEE8 588 aa23.15■■□□□ 1.3
CLN3-209ENST00000561689 DPY19L2P1Q6NXN4 242 aa23.15■■□□□ 1.3
CLN3-209ENST00000561689 NFRKBQ6P4R8 1299 aa23.15■■□□□ 1.3
CLN3-209ENST00000561689 CYP26C1Q6V0L0 522 aa23.15■■□□□ 1.3
CLN3-209ENST00000561689 TMTC1Q8IUR5 882 aa23.15■■□□□ 1.3
CLN3-209ENST00000561689 IFT122Q9HBG6 1241 aa23.15■■□□□ 1.3
CLN3-209ENST00000561689 CEP72Q9P209 647 aa23.15■■□□□ 1.3
CLN3-209ENST00000561689 A0A087WZ62 844 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 RRN3P2A6NIE6 340 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 LRRC53A6NM62 1247 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 GPR25O00155 361 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 EXTL3O43909 919 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 CSDE1O75534 798 aaKnown RBP23.14■■□□□ 1.3
CLN3-209ENST00000561689 HARSP12081 509 aaKnown RBP23.14■■□□□ 1.3
CLN3-209ENST00000561689 GCLMP48507 274 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 ACOT2P49753 483 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 MYL7Q01449 175 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 CYP24A1Q07973 514 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 GNASQ5JWF2 1037 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 ZPBP2Q6X784 338 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 KIAA0319LQ8IZA0 1049 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 MFSD14AQ96MC6 490 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 POP1Q99575 1024 aaKnown RBP23.14■■□□□ 1.3
CLN3-209ENST00000561689 FDXACB1Q9BRP7 624 aaPredicted RBP23.14■■□□□ 1.3
CLN3-209ENST00000561689 DESI2Q9BSY9 194 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 MSTO1Q9BUK6 570 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 GANQ9H2C0 597 aa23.14■■□□□ 1.3
CLN3-209ENST00000561689 ZNHIT6Q9NWK9 470 aaKnown RBP23.14■■□□□ 1.3
CLN3-209ENST00000561689 NRCAMQ92823 1304 aa23.14■■□□□ 1.29
CLN3-209ENST00000561689 A0A0B4J269 797 aa23.14■■□□□ 1.29
CLN3-209ENST00000561689 SEPT4O43236 478 aa23.14■■□□□ 1.29
CLN3-209ENST00000561689 IQCF3P0C7M6 154 aa23.14■■□□□ 1.29
CLN3-209ENST00000561689 PRKAR2AP13861 404 aaKnown RBP23.14■■□□□ 1.29
CLN3-209ENST00000561689 CCND3P30281 292 aaPredicted RBP23.14■■□□□ 1.29
CLN3-209ENST00000561689 NLRP11P59045 1033 aaKnown RBP23.14■■□□□ 1.29
CLN3-209ENST00000561689 MBTD1Q05BQ5 628 aa23.14■■□□□ 1.29
CLN3-209ENST00000561689 HIC1Q14526 733 aa23.14■■□□□ 1.29
CLN3-209ENST00000561689 KLHDC7AQ5VTJ3 777 aa23.14■■□□□ 1.29
CLN3-209ENST00000561689 PARD3BQ8TEW8 1205 aa23.14■■□□□ 1.29
CLN3-209ENST00000561689 MAP7D2Q96T17 732 aa23.14■■□□□ 1.29
CLN3-209ENST00000561689 ACO2Q99798 780 aaKnown RBP23.14■■□□□ 1.29
CLN3-209ENST00000561689 EDEM3Q9BZQ6 932 aa23.14■■□□□ 1.29
CLN3-209ENST00000561689 FZD8Q9H461 694 aa23.14■■□□□ 1.29
CLN3-209ENST00000561689 PLCB1Q9NQ66 1216 aa23.14■■□□□ 1.29
CLN3-209ENST00000561689 ZNF233A6NK53 670 aa23.13■■□□□ 1.29
CLN3-209ENST00000561689 HAS3O00219 553 aa23.13■■□□□ 1.29
CLN3-209ENST00000561689 B4GALT5O43286 388 aa23.13■■□□□ 1.29
CLN3-209ENST00000561689 PHKA2P46019 1235 aa23.13■■□□□ 1.29
CLN3-209ENST00000561689 GJA9P57773 515 aa23.13■■□□□ 1.29
CLN3-209ENST00000561689 PURAQ00577 322 aaKnown RBP23.13■■□□□ 1.29
CLN3-209ENST00000561689 MEA1Q16626 185 aa23.13■■□□□ 1.29
CLN3-209ENST00000561689 ZBTB41Q5SVQ8 909 aa23.13■■□□□ 1.29
CLN3-209ENST00000561689 ZBTB33Q86T24 672 aa23.13■■□□□ 1.29
CLN3-209ENST00000561689 TCHPQ9BT92 498 aa23.13■■□□□ 1.29
CLN3-209ENST00000561689 FAM49AQ9H0Q0 323 aaPredicted RBP23.13■■□□□ 1.29
CLN3-209ENST00000561689 SIX2Q9NPC8 291 aa23.13■■□□□ 1.29
CLN3-209ENST00000561689 CLDN3O15551 220 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 RARBP10826 455 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 HOXD10P28358 340 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 PDXDC1Q6P996 788 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 TRIM65Q6PJ69 517 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 NLRP7Q8WX94 980 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 KCND1Q9NSA2 647 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 LRRIQ3A6PVS8 624 aaPredicted RBP23.12■■□□□ 1.29
CLN3-209ENST00000561689 ACKR2O00590 384 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 TOM1L1O75674 476 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 DLATP10515 647 aaKnown RBP23.12■■□□□ 1.29
CLN3-209ENST00000561689 UCHL3P15374 230 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 PRPF4BQ13523 1007 aaKnown RBP23.12■■□□□ 1.29
CLN3-209ENST00000561689 SEZ6Q53EL9 994 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 CRELD2Q6UXH1 353 aaPredicted RBP23.12■■□□□ 1.29
CLN3-209ENST00000561689 PPP1R13BQ96KQ4 1090 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 SCLT1Q96NL6 688 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 NFKBIZQ9BYH8 718 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 KIAA1586Q9HCI6 787 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 TOPORSQ9NS56 1045 aaPredicted RBP23.12■■□□□ 1.29
CLN3-209ENST00000561689 PLAGL2Q9UPG8 496 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 FHOD1Q9Y613 1164 aa23.12■■□□□ 1.29
CLN3-209ENST00000561689 KIAA0391O15091 583 aaKnown RBP23.11■■□□□ 1.29
CLN3-209ENST00000561689 POU5F1BQ06416 359 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms