RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 IGKV6D-21A0A0A0MT36 114 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 ARHGEF35A5YM69 484 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 EML1O00423 815 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 HBP1O60381 514 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 MED24O75448 989 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 ATG7O95352 703 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 SP100P23497 879 aaPredicted RBP13.01□□□□□ -0.33
LDLR-212ENST00000560467 SLC26A2P50443 739 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 SIGLEC14Q08ET2 396 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 STIM1Q13586 685 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 E2F4Q16254 413 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 STX1AQ16623 288 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 KIZQ2M2Z5 673 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 TMEM119Q4V9L6 283 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 SWSAP1Q6NVH7 229 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 PDXDC2PQ6P474 469 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 POTEGQ6S5H5 508 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 ABHD15Q6UXT9 468 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 SLC24A5Q71RS6 500 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 FAM228AQ86W67 206 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 EXOC8Q8IYI6 725 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 TRIML1Q8N9V2 468 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 ASIC4Q96FT7 647 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 FAM167AQ96KS9 214 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 OSMRQ99650 979 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 MMTAG2Q9BU76 263 aaKnown RBP13.01□□□□□ -0.33
LDLR-212ENST00000560467 ZNF302Q9NR11 478 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 AAASQ9NRG9 546 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 RGS18Q9NS28 235 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 C1orf112Q9NSG2 853 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 RGL1Q9NZL6 768 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 GABBR1Q9UBS5 961 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 KCNG1Q9UIX4 513 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 CDH22Q9UJ99 828 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 MYH15Q9Y2K3 1946 aa13.01□□□□□ -0.33
LDLR-212ENST00000560467 ZFHX2Q9C0A1 2572 aaPredicted RBP13.01□□□□□ -0.33
LDLR-212ENST00000560467 TBCAO75347 108 aaKnown RBP13□□□□□ -0.33
LDLR-212ENST00000560467 LYPLA2O95372 231 aa13□□□□□ -0.33
LDLR-212ENST00000560467 C22orf31O95567 290 aa13□□□□□ -0.33
LDLR-212ENST00000560467 ATF7P17544 494 aaPredicted RBP13□□□□□ -0.33
LDLR-212ENST00000560467 ATP4AP20648 1035 aa13□□□□□ -0.33
LDLR-212ENST00000560467 PBX3P40426 434 aa13□□□□□ -0.33
LDLR-212ENST00000560467 ZNF445P59923 1031 aa13□□□□□ -0.33
LDLR-212ENST00000560467 ASIC1P78348 528 aa13□□□□□ -0.33
LDLR-212ENST00000560467 PNOCQ13519 176 aa13□□□□□ -0.33
LDLR-212ENST00000560467 MCM6Q14566 821 aa13□□□□□ -0.33
LDLR-212ENST00000560467 LLGL2Q6P1M3 1020 aa13□□□□□ -0.33
LDLR-212ENST00000560467 LRSAM1Q6UWE0 723 aa13□□□□□ -0.33
LDLR-212ENST00000560467 B3GNT9Q6UX72 402 aa13□□□□□ -0.33
LDLR-212ENST00000560467 CCDC65Q8IXS2 484 aa13□□□□□ -0.33
LDLR-212ENST00000560467 C4orf19Q8IY42 314 aa13□□□□□ -0.33
LDLR-212ENST00000560467 PNMA5Q96PV4 448 aa13□□□□□ -0.33
LDLR-212ENST00000560467 CDCA3Q99618 268 aaPredicted RBP13□□□□□ -0.33
LDLR-212ENST00000560467 C7orf25Q9BPX7 421 aa13□□□□□ -0.33
LDLR-212ENST00000560467 S1PR5Q9H228 398 aa13□□□□□ -0.33
LDLR-212ENST00000560467 CWH43Q9H720 699 aa13□□□□□ -0.33
LDLR-212ENST00000560467 ATP6V0A4Q9HBG4 840 aa13□□□□□ -0.33
LDLR-212ENST00000560467 ANKEF1Q9NU02 776 aa13□□□□□ -0.33
LDLR-212ENST00000560467 KBTBD4Q9NVX7 518 aa13□□□□□ -0.33
LDLR-212ENST00000560467 TCHHQ07283 1943 aa13□□□□□ -0.33
LDLR-212ENST00000560467 KIAA1671Q9BY89 1806 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 COL1A2P08123 1366 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 A0A087X0B3 334 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 PVALEFA0A1B0GWK0 134 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 HIDE1A8MVS5 230 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 E9PMD0 336 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 KIF20AO95235 890 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 PDGFBP01127 241 aaPredicted RBP12.99□□□□□ -0.33
LDLR-212ENST00000560467 VTNP04004 478 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 RPN1P04843 607 aaKnown RBP12.99□□□□□ -0.33
LDLR-212ENST00000560467 SPATA31C1P0DKV0 1188 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 IDEP14735 1019 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 LAG3P18627 525 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 YWHABP31946 246 aaKnown RBP12.99□□□□□ -0.33
LDLR-212ENST00000560467 PPP1R2P41236 205 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 KCNC3Q14003 757 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 DSC3Q14574 896 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 PTPN21Q16825 1174 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 XKR3Q5GH77 459 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 ANKRD54Q6NXT1 300 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 SYCE2Q6PIF2 218 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 RBM43Q6ZSC3 357 aaKnown RBP12.99□□□□□ -0.33
LDLR-212ENST00000560467 TRMT1LQ7Z2T5 733 aaKnown RBP12.99□□□□□ -0.33
LDLR-212ENST00000560467 GPBP1Q86WP2 473 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 SYT2Q8N9I0 419 aaPredicted RBP12.99□□□□□ -0.33
LDLR-212ENST00000560467 TCF25Q9BQ70 676 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 TIPINQ9BVW5 301 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 BHMT2Q9H2M3 363 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 ENTPD7Q9NQZ7 604 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 RNF19AQ9NV58 838 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 EXOC1Q9NV70 894 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 TMEM161AQ9NX61 479 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 DBR1Q9UK59 544 aaKnown RBP12.99□□□□□ -0.33
LDLR-212ENST00000560467 PCDHA5Q9Y5H7 936 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 KAT6AQ92794 2004 aa12.99□□□□□ -0.33
LDLR-212ENST00000560467 GPR182O15218 404 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 GPR32O75388 356 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 CLCN3P51790 818 aa12.98□□□□□ -0.33
LDLR-212ENST00000560467 CRYBB1P53674 252 aaPredicted RBP12.98□□□□□ -0.33
LDLR-212ENST00000560467 TPM4P67936 248 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms