RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 TRIM49BA6NDI0 452 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 TISP43B9A030 160 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 ANKRD63C9JTQ0 380 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 KIAA0355O15063 1070 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 GPR182O15218 404 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 CLIC2O15247 247 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 TGFB1I1O43294 461 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 EVI5O60447 810 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 TSPAN1O60635 241 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 TIMP1P01033 207 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 RAG1P15918 1043 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 ARF4P18085 180 aaPredicted RBP10.53□□□□□ -0.72
CUX1-216ENST00000558469 CCNE1P24864 410 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 CD52P31358 61 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 MATR3P43243 847 aaKnown RBP eCLIP10.53□□□□□ -0.726e-7■■■■□ 23.8
CUX1-216ENST00000558469 STX17P56962 302 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 NCBP1Q09161 790 aaKnown RBP10.53□□□□□ -0.72
CUX1-216ENST00000558469 NFX1Q12986 1120 aaKnown RBP10.53□□□□□ -0.72
CUX1-216ENST00000558469 PAK1Q13153 545 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 PAK2Q13177 524 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 PCBP1Q15365 356 aaKnown RBP eCLIP10.53□□□□□ -0.726e-6■■■■■ 34.5
CUX1-216ENST00000558469 AMHR2Q16671 573 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 ATF7IP2Q5U623 682 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 ANKRD40Q6AI12 368 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 TSHZ1Q6ZSZ6 1077 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 C7orf61Q8IZ16 206 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 USP38Q8NB14 1042 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 DPF3Q92784 378 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 P2RX5Q93086 422 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 ACO2Q99798 780 aaKnown RBP10.53□□□□□ -0.72
CUX1-216ENST00000558469 TSG101Q99816 390 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 MRPL4Q9BYD3 311 aaKnown RBP10.53□□□□□ -0.72
CUX1-216ENST00000558469 NAT10Q9H0A0 1025 aaKnown RBP10.53□□□□□ -0.72
CUX1-216ENST00000558469 GBP3Q9H0R5 595 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 AGO3Q9H9G7 860 aaKnown RBP10.53□□□□□ -0.72
CUX1-216ENST00000558469 TYW1Q9NV66 732 aaKnown RBP10.53□□□□□ -0.72
CUX1-216ENST00000558469 PRKAG2Q9UGJ0 569 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 PADI3Q9ULW8 664 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 SQORQ9Y6N5 450 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 CNTNAP2Q9UHC6 1331 aa10.53□□□□□ -0.72
CUX1-216ENST00000558469 BICDL2A1A5D9 508 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 PDXKO00764 312 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 CALUO43852 315 aaPredicted RBP10.52□□□□□ -0.73
CUX1-216ENST00000558469 NBNO60934 754 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 PIGRP01833 764 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 ITGB8P26012 769 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 ERCC5P28715 1186 aaPredicted RBP10.52□□□□□ -0.73
CUX1-216ENST00000558469 AXLP30530 894 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 PMS1P54277 932 aaKnown RBP10.52□□□□□ -0.73
CUX1-216ENST00000558469 CT47A1Q5JQC4 288 aaPredicted RBP10.52□□□□□ -0.73
CUX1-216ENST00000558469 CENPPQ6IPU0 288 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 SLC39A4Q6P5W5 647 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 ZPBP2Q6X784 338 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 HS2ST1Q7LGA3 356 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 DEFB128Q7Z7B8 93 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 ZBTB33Q86T24 672 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 CDR2LQ86X02 465 aaPredicted RBP10.52□□□□□ -0.73
CUX1-216ENST00000558469 POMGNT1Q8WZA1 660 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 ZBTB45Q96K62 511 aaPredicted RBP10.52□□□□□ -0.73
CUX1-216ENST00000558469 TCHPQ9BT92 498 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 IFIH1Q9BYX4 1025 aaKnown RBP10.52□□□□□ -0.73
CUX1-216ENST00000558469 ERVK-5Q9HDB9 667 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 AGPAT3Q9NRZ7 376 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 AGPAT5Q9NUQ2 364 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 ANKFY1Q9P2R3 1169 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 RWDD2AQ9UIY3 292 aa10.52□□□□□ -0.73
CUX1-216ENST00000558469 PIN4Q9Y237 131 aaKnown RBP10.52□□□□□ -0.73
CUX1-216ENST00000558469 PDCD11Q14690 1871 aaKnown RBP10.51□□□□□ -0.73
CUX1-216ENST00000558469 TDRD15B5MCY1 1934 aaKnown RBP10.51□□□□□ -0.73
CUX1-216ENST00000558469 A0A1B0GUA9 196 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 N4BP3O15049 544 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 CLDN3O15551 220 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 TOM1L1O75674 476 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 PARNO95453 639 aaKnown RBP10.51□□□□□ -0.73
CUX1-216ENST00000558469 ADSSP30520 456 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 HOXA11P31270 313 aaPredicted RBP10.51□□□□□ -0.73
CUX1-216ENST00000558469 PSEN1P49768 467 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 ZNF165P49910 485 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 CYP2J2P51589 502 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 SNRPFP62306 86 aaKnown RBP10.51□□□□□ -0.73
CUX1-216ENST00000558469 LRRC63Q05C16 580 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 GPNMBQ14956 572 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 TPD52L1Q16890 204 aaPredicted RBP10.51□□□□□ -0.73
CUX1-216ENST00000558469 ZCWPW2Q504Y3 356 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 EEF1DP3Q658K8 133 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 SLFN12LQ6IEE8 588 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 TTI2Q6NXR4 508 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 ARMCX5Q6P1M9 558 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 NOTUMQ6P988 496 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 TMEM199Q8N511 208 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 GOLGA5Q8TBA6 731 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 NOC3LQ8WTT2 800 aaKnown RBP10.51□□□□□ -0.73
CUX1-216ENST00000558469 MED15Q96RN5 788 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 DUSP9Q99956 384 aaKnown RBP10.51□□□□□ -0.73
CUX1-216ENST00000558469 HAPLN2Q9GZV7 340 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 PCIF1Q9H4Z3 704 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 PDZD7Q9H5P4 517 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 PTPRHQ9HD43 1115 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 PCDH10Q9P2E7 1040 aa10.51□□□□□ -0.73
CUX1-216ENST00000558469 CGNQ9P2M7 1197 aaKnown RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms