RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 VEGFAP15692 232 aaPredicted RBP11.71□□□□□ -0.54
USP3-206ENST00000558157 DRG2P55039 364 aaKnown RBP11.71□□□□□ -0.54
USP3-206ENST00000558157 NLRP5P59047 1200 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 CLUL1Q15846 466 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 CNGA2Q16280 664 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 OR52E8Q6IFG1 317 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 RBBP8NLQ8NC74 664 aaPredicted RBP11.71□□□□□ -0.54
USP3-206ENST00000558157 GMCL1P1Q8NEA9 526 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 DCAF4Q8WV16 495 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 DNAJC9Q8WXX5 260 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 FGD4Q96M96 766 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 C7orf25Q9BPX7 421 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 LRMDAQ9H2I8 198 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 VCX3BQ9H321 246 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 VCX3AQ9NNX9 186 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 PRKAG3Q9UGI9 489 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 LRCH1Q9Y2L9 728 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 NOC2LQ9Y3T9 749 aaKnown RBP11.71□□□□□ -0.54
USP3-206ENST00000558157 SLC4A7Q9Y6M7 1214 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 PAPPA2Q9BXP8 1791 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 OTOFQ9HC10 1997 aa11.71□□□□□ -0.54
USP3-206ENST00000558157 LAD1O00515 517 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 NDUFB10O96000 172 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 RAD23BP54727 409 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 AMPD3Q01432 767 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 PFKFB3Q16875 520 aaPredicted RBP11.7□□□□□ -0.54
USP3-206ENST00000558157 EAPPQ56P03 285 aaPredicted RBP11.7□□□□□ -0.54
USP3-206ENST00000558157 TTBK2Q6IQ55 1244 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 MFSD5Q6N075 450 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 SULF1Q8IWU6 871 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 C4orf32Q8N8J7 132 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 LZICQ8WZA0 190 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 INPP5DQ92835 1189 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 FAM136AQ96C01 138 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 WRNIP1Q96S55 665 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 GLIS2Q9BZE0 524 aaPredicted RBP11.7□□□□□ -0.54
USP3-206ENST00000558157 AIPL1Q9NZN9 384 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 TMCO1Q9UM00 188 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 PHF24Q9UPV7 400 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 ATP8A1Q9Y2Q0 1164 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 IQCA1LA6NCM1 817 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 F5H6K3 240 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 MCM7P33993 719 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 UBA7P41226 1012 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 PMS2P54278 862 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 LRRC63Q05C16 580 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 KLRC3Q07444 240 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 PDE4DQ08499 809 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 SFSWAPQ12872 951 aaKnown RBP11.7□□□□□ -0.54
USP3-206ENST00000558157 GPATCH4Q5T3I0 446 aaKnown RBP11.7□□□□□ -0.54
USP3-206ENST00000558157 DTHD1Q6ZMT9 781 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 ANKRD23Q86SG2 305 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 KIF2BQ8N4N8 673 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 GPKOWQ92917 476 aaPredicted RBP eCLIP11.7□□□□□ -0.54
USP3-206ENST00000558157 OPTNQ96CV9 577 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 RPS6KC1Q96S38 1066 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 NAP1L3Q99457 506 aaPredicted RBP11.7□□□□□ -0.54
USP3-206ENST00000558157 TIPINQ9BVW5 301 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 ZNF112Q9UJU3 913 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 DIS3Q9Y2L1 958 aaKnown RBP11.7□□□□□ -0.54
USP3-206ENST00000558157 TMX2Q9Y320 296 aa11.7□□□□□ -0.54
USP3-206ENST00000558157 FAM187AA6NFU0 413 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 PEX11AO75192 247 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 ZBTB48P10074 688 aaPredicted RBP11.69□□□□□ -0.54
USP3-206ENST00000558157 ANXA13P27216 316 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 SLC16A2P36021 539 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 PRKG1Q13976 671 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 ZRSR2Q15696 482 aaKnown RBP11.69□□□□□ -0.54
USP3-206ENST00000558157 ZYXQ15942 572 aaKnown RBP11.69□□□□□ -0.54
USP3-206ENST00000558157 KIAA1755Q5JYT7 1200 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 LCA5Q86VQ0 697 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 SYCE1Q8N0S2 351 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 TBC1D5Q92609 795 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 GMCL1Q96IK5 515 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 AK8Q96MA6 479 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 ROPN1BQ9BZX4 212 aaPredicted RBP11.69□□□□□ -0.54
USP3-206ENST00000558157 DDX47Q9H0S4 455 aaKnown RBP11.69□□□□□ -0.54
USP3-206ENST00000558157 EPB41L4BQ9H329 900 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 RIOX1Q9H6W3 641 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 ROPN1Q9HAT0 212 aaPredicted RBP11.69□□□□□ -0.54
USP3-206ENST00000558157 PIDD1Q9HB75 910 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 VAT1LQ9HCJ6 419 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 KLHL14Q9P2G3 628 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 PDP2Q9P2J9 529 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 SUCLA2Q9P2R7 463 aaPredicted RBP11.69□□□□□ -0.54
USP3-206ENST00000558157 ATXN10Q9UBB4 475 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 AMACRQ9UHK6 382 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 GMEB1Q9Y692 573 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 PHIPQ8WWQ0 1821 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 POTEFA5A3E0 1075 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 EYA4O95677 639 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 POTEIP0CG38 1075 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 POTEJP0CG39 1038 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 CALML3P27482 149 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 DNA2P51530 1060 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 RNASE9P60153 205 aaKnown RBP11.69□□□□□ -0.54
USP3-206ENST00000558157 POU5F1Q01860 360 aaKnown RBP11.69□□□□□ -0.54
USP3-206ENST00000558157 SUPT20HL1Q3ZLR7 823 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 SPDYAQ5MJ70 313 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 POTEEQ6S8J3 1075 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms