RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 SV2BQ7L1I2 683 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 MICALL1Q8N3F8 863 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 COLGALT1Q8NBJ5 622 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 SMG8Q8ND04 991 aaKnown RBP13.75□□□□□ -0.21
SLIRP-209ENST00000557342 LRRC15Q8TF66 581 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 REEP2Q9BRK0 252 aa13.75□□□□□ -0.21
SLIRP-209ENST00000557342 EIF2AQ9BY44 585 aaKnown RBP13.75□□□□□ -0.21
SLIRP-209ENST00000557342 MRPL4Q9BYD3 311 aaKnown RBP13.75□□□□□ -0.21
SLIRP-209ENST00000557342 ZMYM2Q9UBW7 1377 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 NPHP3-ACAD11A0A0J9YXS1 232 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 SLC16A4O15374 487 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 TBCAO75347 108 aaKnown RBP13.74□□□□□ -0.21
SLIRP-209ENST00000557342 ABCD1P33897 745 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 PPM1AP35813 382 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 ME1P48163 572 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 NUCB2P80303 420 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 UBE3AQ05086 875 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 STRN3Q13033 797 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 GIT2Q14161 759 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 CCDC85BQ15834 202 aaPredicted RBP13.74□□□□□ -0.21
SLIRP-209ENST00000557342 DCAF4L1Q3SXM0 396 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 TIGD5Q53EQ6 642 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 ATF7IP2Q5U623 682 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 LRRC55Q6ZSA7 311 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 THNSL1Q8IYQ7 743 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 KLHL23Q8NBE8 558 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 PPM1EQ8WY54 764 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 ZNF558Q96NG5 402 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 CUEDC2Q9H467 287 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 PDZD7Q9H5P4 517 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 PARVGQ9HBI0 331 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 RCOR1Q9UKL0 485 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 PLAGL2Q9UPG8 496 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 INPP5FQ9Y2H2 1132 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 GIT1Q9Y2X7 761 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 ZDHHC9Q9Y397 364 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 CITO14578 2027 aa13.74□□□□□ -0.21
SLIRP-209ENST00000557342 PRRC2BQ5JSZ5 2229 aaKnown RBP13.74□□□□□ -0.21
SLIRP-209ENST00000557342 TRIP11Q15643 1979 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 CHD9Q3L8U1 2897 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 MEIS3P2A8K0S8 358 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 GRM6O15303 877 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 ZNF131P52739 623 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 NCKAP1LP55160 1127 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 CACNB1Q02641 598 aaPredicted RBP13.73□□□□□ -0.21
SLIRP-209ENST00000557342 RNASELQ05823 741 aaKnown RBP13.73□□□□□ -0.21
SLIRP-209ENST00000557342 NT5DC1Q5TFE4 455 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 KCNT2Q6UVM3 1135 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 CDR2LQ86X02 465 aaPredicted RBP13.73□□□□□ -0.21
SLIRP-209ENST00000557342 MYCT1Q8N699 235 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 SLC17A8Q8NDX2 589 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 TMEM161BQ8NDZ6 487 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 KCNN1Q92952 543 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 FAM193BQ96PV7 902 aaPredicted RBP13.73□□□□□ -0.21
SLIRP-209ENST00000557342 PYM1Q9BRP8 204 aaKnown RBP13.73□□□□□ -0.21
SLIRP-209ENST00000557342 LRRC27Q9C0I9 530 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 ZHX3Q9H4I2 956 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 ALG13Q9NP73 1137 aaKnown RBP13.73□□□□□ -0.21
SLIRP-209ENST00000557342 TBC1D13Q9NVG8 400 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 FAM13BQ9NYF5 915 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 PCDHA7Q9UN72 937 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 TNFSF13BQ9Y275 285 aa13.73□□□□□ -0.21
SLIRP-209ENST00000557342 INPPL1O15357 1258 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 TRAK2O60296 914 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 FGF18O76093 207 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 ITGB1P05556 798 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 MAPTP10636 758 aaKnown RBP13.72□□□□□ -0.21
SLIRP-209ENST00000557342 ALDH7A1P49419 539 aaKnown RBP13.72□□□□□ -0.21
SLIRP-209ENST00000557342 PLCB3Q01970 1234 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 KRT17Q04695 432 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 AXDND1Q5T1B0 1012 aaPredicted RBP13.72□□□□□ -0.21
SLIRP-209ENST00000557342 SHC4Q6S5L8 630 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 PDILTQ8N807 584 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 IQUBQ8NA54 791 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 SPPL3Q8TCT6 385 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 SPATA32Q96LK8 384 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 ACO2Q99798 780 aaKnown RBP13.72□□□□□ -0.21
SLIRP-209ENST00000557342 APOL6Q9BWW8 343 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 PANK2Q9BZ23 570 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 SCAND2PQ9GZW5 306 aaPredicted RBP13.72□□□□□ -0.21
SLIRP-209ENST00000557342 NXF3Q9H4D5 531 aaKnown RBP13.72□□□□□ -0.21
SLIRP-209ENST00000557342 NSUN3Q9H649 340 aaKnown RBP13.72□□□□□ -0.21
SLIRP-209ENST00000557342 SPG21Q9NZD8 308 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 HCSTQ9UBK5 93 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 PARP2Q9UGN5 583 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 PUF60Q9UHX1 559 aaKnown RBP13.72□□□□□ -0.21
SLIRP-209ENST00000557342 LZTS1Q9Y250 596 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 HES2Q9Y543 173 aa13.72□□□□□ -0.21
SLIRP-209ENST00000557342 A0A087X0B3 334 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 ARL5CA6NH57 179 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 TTLL13PA6NNM8 815 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 K7ENM7 598 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 ZC3H11AO75152 810 aaKnown RBP eCLIP13.71□□□□□ -0.21
SLIRP-209ENST00000557342 EDN1P05305 212 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 GAP43P17677 238 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 BCAR1P56945 870 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 AMPD3Q01432 767 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 SKIV2LQ15477 1246 aaKnown RBP13.71□□□□□ -0.21
SLIRP-209ENST00000557342 RESP18Q5W5W9 173 aa13.71□□□□□ -0.21
SLIRP-209ENST00000557342 PDE12Q6L8Q7 609 aaKnown RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms