RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 SNW1Q13573 536 aaKnown RBP10.48□□□□□ -0.73
SYNE2-224ENST00000557024 COL9A3Q14050 684 aaPredicted RBP10.48□□□□□ -0.73
SYNE2-224ENST00000557024 UBXN2BQ14CS0 331 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 ZNF746Q6NUN9 644 aaPredicted RBP10.48□□□□□ -0.73
SYNE2-224ENST00000557024 ELMSAN1Q6PJG2 1045 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 CYP26C1Q6V0L0 522 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 TAS1R1Q7RTX1 841 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 SMAP1Q8IYB5 467 aaPredicted RBP10.48□□□□□ -0.73
SYNE2-224ENST00000557024 URGCPQ8TCY9 931 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 SHDQ96IW2 340 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 FAM167AQ96KS9 214 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 RPS6KC1Q96S38 1066 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 RPP25Q9BUL9 199 aaKnown RBP10.48□□□□□ -0.73
SYNE2-224ENST00000557024 TRAIPQ9BWF2 469 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 BCO2Q9BYV7 579 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 RHOBTB2Q9BYZ6 727 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 GCOM2Q9BZD3 368 aaPredicted RBP10.48□□□□□ -0.73
SYNE2-224ENST00000557024 PIDD1Q9HB75 910 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 FAM105AQ9NUU6 356 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.48□□□□□ -0.73
SYNE2-224ENST00000557024 STK39Q9UEW8 545 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 FBXO4Q9UKT5 387 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 FAN1Q9Y2M0 1017 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 MTF2Q9Y483 593 aaPredicted RBP10.48□□□□□ -0.73
SYNE2-224ENST00000557024 PCDHGA2Q9Y5H1 932 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 PCDHA10Q9Y5I2 948 aa10.48□□□□□ -0.73
SYNE2-224ENST00000557024 A0A087WZ62 844 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 KANSL1LA0AUZ9 987 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 SMCO2A6NFE2 343 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 SGSM2O43147 1006 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 ALDH2P05091 517 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 CALM1P0DP23 149 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 CALM2P0DP24 149 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 CALM3P0DP25 149 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 SKIP12755 728 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 HOXB1P14653 301 aaPredicted RBP10.47□□□□□ -0.73
SYNE2-224ENST00000557024 TGM1P22735 817 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 SFPQP23246 707 aaKnown RBP eCLIP10.47□□□□□ -0.73
SYNE2-224ENST00000557024 AFF1P51825 1210 aaKnown RBP10.47□□□□□ -0.73
SYNE2-224ENST00000557024 PRKCEQ02156 737 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 AP3B2Q13367 1082 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 UGCGQ16739 394 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 C8orf34Q49A92 452 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 JAKMIP3Q5VZ66 844 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 PPP1R18Q6NYC8 613 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 MICU3Q86XE3 530 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 FANCBQ8NB91 859 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 PHKBQ93100 1093 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 FAM193BQ96PV7 902 aaPredicted RBP10.47□□□□□ -0.73
SYNE2-224ENST00000557024 FDXACB1Q9BRP7 624 aaPredicted RBP10.47□□□□□ -0.73
SYNE2-224ENST00000557024 HERC2P3Q9BVR0 1158 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 EPC1Q9H2F5 836 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 PARD6AQ9NPB6 346 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 ANO2Q9NQ90 1003 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 TBC1D22BQ9NU19 505 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 ZSCAN32Q9NX65 697 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 DPP7Q9UHL4 492 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 LHX6Q9UPM6 363 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 PRG3Q9Y2Y8 225 aaPredicted RBP10.47□□□□□ -0.73
SYNE2-224ENST00000557024 SLC12A7Q9Y666 1083 aa10.47□□□□□ -0.73
SYNE2-224ENST00000557024 FAM170BA6NMN3 283 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 NRP1O14786 923 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 ZNF623O75123 536 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 POMCP01189 267 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 SOD2P04179 222 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 CD72P21854 359 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 MCM5P33992 734 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 GLUD2P49448 558 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 RAB27AP51159 221 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 MLF2Q15773 248 aaPredicted RBP10.46□□□□□ -0.73
SYNE2-224ENST00000557024 PPM1JQ5JR12 505 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 TSSK4Q6SA08 328 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 PARM1Q6UWI2 310 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 AGMOQ6ZNB7 445 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 PALB2Q86YC2 1186 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 TMTC2Q8N394 836 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 ZBTB44Q8NCP5 570 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 FGF14Q92915 247 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 PGBD4Q96DM1 585 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 TMEM175Q9BSA9 504 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 DDX23Q9BUQ8 820 aaKnown RBP10.46□□□□□ -0.73
SYNE2-224ENST00000557024 LRRC2Q9BYS8 371 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 BACH2Q9BYV9 841 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 NT5C3AQ9H0P0 336 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 NRBP2Q9NSY0 501 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 MARCH5Q9NX47 278 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 PCDHB2Q9Y5E7 798 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 CNTNAP5Q8WYK1 1306 aa10.46□□□□□ -0.73
SYNE2-224ENST00000557024 COL4A3Q01955 1670 aa10.46□□□□□ -0.74
SYNE2-224ENST00000557024 WDR64B1ANS9 1081 aa10.45□□□□□ -0.74
SYNE2-224ENST00000557024 F8W810 466 aa10.45□□□□□ -0.74
SYNE2-224ENST00000557024 LILRB5O75023 590 aa10.45□□□□□ -0.74
SYNE2-224ENST00000557024 FSHRP23945 695 aa10.45□□□□□ -0.74
SYNE2-224ENST00000557024 LIFRP42702 1097 aa10.45□□□□□ -0.74
SYNE2-224ENST00000557024 CLK2P49760 499 aaKnown RBP10.45□□□□□ -0.74
SYNE2-224ENST00000557024 SETQ01105 290 aaPredicted RBP10.45□□□□□ -0.74
SYNE2-224ENST00000557024 LPAL2Q16609 132 aa10.45□□□□□ -0.74
SYNE2-224ENST00000557024 SLC44A4Q53GD3 710 aa10.45□□□□□ -0.74
SYNE2-224ENST00000557024 PRR16Q569H4 304 aa10.45□□□□□ -0.74
SYNE2-224ENST00000557024 CATSPER4Q7RTX7 472 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms