RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 DNA2P51530 1060 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 CDR2Q01850 454 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 SUZ12Q15022 739 aaKnown RBP14.73□□□□□ -0.05
SHMT2-226ENST00000556825 FIGNQ5HY92 759 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 TYW1BQ6NUM6 668 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 PDXDC1Q6P996 788 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 TGS1Q96RS0 853 aaKnown RBP14.73□□□□□ -0.05
SHMT2-226ENST00000556825 FMO2Q99518 471 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 RPAP3Q9H6T3 665 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-226ENST00000556825 AASDHPPTQ9NRN7 309 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 ZDHHC7Q9NXF8 308 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 VPS54Q9P1Q0 977 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 SRPRBQ9Y5M8 271 aaKnown RBP14.73□□□□□ -0.05
SHMT2-226ENST00000556825 RGPD1P0DJD0 1748 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 ANKRD34BA5PLL1 514 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 CCDC160A6NGH7 325 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 FAM196BA6NMK8 535 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 CNOT3O75175 753 aaKnown RBP14.73□□□□□ -0.05
SHMT2-226ENST00000556825 PALMO75781 387 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 PABPC1P11940 636 aaKnown RBP14.73□□□□□ -0.05
SHMT2-226ENST00000556825 MZF1P28698 734 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-226ENST00000556825 EIF4A3P38919 411 aaKnown RBP14.73□□□□□ -0.05
SHMT2-226ENST00000556825 KAZNQ674X7 775 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 NKX2-3Q8TAU0 364 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 MIPEPQ99797 713 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 CCDC113Q9H0I3 377 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 PARVGQ9HBI0 331 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 NLRC4Q9NPP4 1024 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 PLAGL2Q9UPG8 496 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 SLC30A1Q9Y6M5 507 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 WASF2Q9Y6W5 498 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 ZNF609O15014 1411 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 GOLGA8BA8MQT2 603 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 SLC26A4O43511 780 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 RANBP6O60518 1105 aaKnown RBP14.72□□□□□ -0.05
SHMT2-226ENST00000556825 FTCDO95954 541 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 PCSK6P29122 969 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 GNA11P29992 359 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 GPC3P51654 580 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 TEFQ10587 303 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 WASHC5Q12768 1159 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 MED21Q13503 144 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 FYB2Q5VWT5 728 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 DHRS4L2Q6PKH6 230 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 GOLM1Q8NBJ4 401 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 GABPB2Q8TAK5 448 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-226ENST00000556825 C2orf49Q9BVC5 232 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-226ENST00000556825 EBF3Q9H4W6 596 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 SLITRK6Q9H5Y7 841 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 UVRAGQ9P2Y5 699 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 MYO5AQ9Y4I1 1855 aaKnown RBP14.72□□□□□ -0.05
SHMT2-226ENST00000556825 KLF18A0A0U1RQI7 1052 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 TMEM114B3SHH9 223 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 CCDC188H7C350 402 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 CBX6O95503 412 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 BDNFP23560 247 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 NLRP6P59044 892 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 CDC16Q13042 620 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 PPP2R5CQ13362 524 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 SEPT6Q14141 434 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 HLFQ16534 295 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 SLC27A3Q5K4L6 730 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 USP49Q70CQ1 688 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 ILDR2Q71H61 639 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 ZFP28Q8NHY6 868 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 CERKQ8TCT0 537 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 ACTRT1Q8TDG2 376 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 MAGEB18Q96M61 343 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 AIFM3Q96NN9 605 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 SAR1AQ9NR31 198 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 SATB2Q9UPW6 733 aa14.72□□□□□ -0.05
SHMT2-226ENST00000556825 PIK3C2AO00443 1686 aa14.71□□□□□ -0.05
SHMT2-226ENST00000556825 TMEM120BA0PK00 339 aa14.71□□□□□ -0.05
SHMT2-226ENST00000556825 A8MXQ7 604 aa14.71□□□□□ -0.05
SHMT2-226ENST00000556825 SLC5A2P31639 672 aa14.71□□□□□ -0.05
SHMT2-226ENST00000556825 SERPINB6P35237 376 aa14.71□□□□□ -0.05
SHMT2-226ENST00000556825 ACADSBP45954 432 aa14.71□□□□□ -0.05
SHMT2-226ENST00000556825 HSD17B4P51659 736 aa14.71□□□□□ -0.05
SHMT2-226ENST00000556825 IGBP1P78318 339 aa14.71□□□□□ -0.05
SHMT2-226ENST00000556825 AUHQ13825 339 aaKnown RBP14.71□□□□□ -0.05
SHMT2-226ENST00000556825 SPOPLQ6IQ16 392 aa14.71□□□□□ -0.05
SHMT2-226ENST00000556825 RIC3Q7Z5B4 369 aa14.71□□□□□ -0.05
SHMT2-226ENST00000556825 CCDC82Q8N4S0 544 aa14.71□□□□□ -0.05
SHMT2-226ENST00000556825 PHF12Q96QT6 1004 aa14.71□□□□□ -0.05
SHMT2-226ENST00000556825 KLHL4Q9C0H6 718 aa14.71□□□□□ -0.05
SHMT2-226ENST00000556825 SOBPA7XYQ1 873 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 KMOO15229 486 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 PGM3O95394 542 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 TFAP2AP05549 437 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 LDHBP07195 334 aaKnown RBP14.7□□□□□ -0.06
SHMT2-226ENST00000556825 SMIM18P0DKX4 95 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 HOXD13P35453 343 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 EHHADHQ08426 723 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 TRIM71Q2Q1W2 868 aaKnown RBP14.7□□□□□ -0.06
SHMT2-226ENST00000556825 MFSD5Q6N075 450 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 MAMSTRQ6ZN01 415 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 CCDC110Q8TBZ0 833 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 EME1Q96AY2 570 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 PITPNM3Q9BZ71 974 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 USP40Q9NVE5 1235 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms