RNA–Protein interactions for RNA: ENST00000555323.1

SYNE2-219, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 389 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-219ENST00000555323 UBXN11Q5T124 520 aa13.92□□□□□ -0.18
SYNE2-219ENST00000555323 SLC24A5Q71RS6 500 aa13.92□□□□□ -0.18
SYNE2-219ENST00000555323 LINC01599Q8WXQ3 324 aa13.92□□□□□ -0.18
SYNE2-219ENST00000555323 ACCSQ96QU6 501 aa13.92□□□□□ -0.18
SYNE2-219ENST00000555323 TARS2Q9BW92 718 aaKnown RBP13.92□□□□□ -0.18
SYNE2-219ENST00000555323 PRO3102Q9H379 93 aa13.92□□□□□ -0.18
SYNE2-219ENST00000555323 TMEM63CQ9P1W3 806 aa13.92□□□□□ -0.18
SYNE2-219ENST00000555323 EXOC7Q9UPT5 735 aa13.92□□□□□ -0.18
SYNE2-219ENST00000555323 PIN4Q9Y237 131 aaKnown RBP13.92□□□□□ -0.18
SYNE2-219ENST00000555323 STYXL1Q9Y6J8 313 aa13.92□□□□□ -0.18
SYNE2-219ENST00000555323 MYH11P35749 1972 aa13.92□□□□□ -0.18
SYNE2-219ENST00000555323 RBAK-RBAKDNI3L0D1 243 aa13.91□□□□□ -0.18
SYNE2-219ENST00000555323 N4BP3O15049 544 aa13.91□□□□□ -0.18
SYNE2-219ENST00000555323 TOM1L1O75674 476 aa13.91□□□□□ -0.18
SYNE2-219ENST00000555323 KIF20AO95235 890 aa13.91□□□□□ -0.18
SYNE2-219ENST00000555323 SKIP12755 728 aa13.91□□□□□ -0.18
SYNE2-219ENST00000555323 BMP6P22004 513 aa13.91□□□□□ -0.18
SYNE2-219ENST00000555323 KNOP1Q1ED39 458 aaKnown RBP13.91□□□□□ -0.18
SYNE2-219ENST00000555323 CCDC183Q5T5S1 534 aa13.91□□□□□ -0.18
SYNE2-219ENST00000555323 ATF7IP2Q5U623 682 aa13.91□□□□□ -0.18
SYNE2-219ENST00000555323 OTOP2Q7RTS6 562 aa13.91□□□□□ -0.18
SYNE2-219ENST00000555323 MRPL10Q7Z7H8 261 aaKnown RBP13.91□□□□□ -0.18
SYNE2-219ENST00000555323 GUF1Q8N442 669 aaKnown RBP13.91□□□□□ -0.18
SYNE2-219ENST00000555323 TMEM174Q8WUU8 243 aa13.91□□□□□ -0.18
SYNE2-219ENST00000555323 CPB2Q96IY4 423 aa13.91□□□□□ -0.18
SYNE2-219ENST00000555323 PDZD7Q9H5P4 517 aa13.91□□□□□ -0.18
SYNE2-219ENST00000555323 ELAC1Q9H777 363 aaKnown RBP13.91□□□□□ -0.18
SYNE2-219ENST00000555323 USP20Q9Y2K6 914 aa13.91□□□□□ -0.18
SYNE2-219ENST00000555323 EOMESO95936 686 aa13.9□□□□□ -0.18
SYNE2-219ENST00000555323 RAB27AP51159 221 aa13.9□□□□□ -0.18
SYNE2-219ENST00000555323 MCL1Q07820 350 aa13.9□□□□□ -0.18
SYNE2-219ENST00000555323 EEF1DP3Q658K8 133 aa13.9□□□□□ -0.18
SYNE2-219ENST00000555323 TWF2Q6IBS0 349 aaKnown RBP13.9□□□□□ -0.18
SYNE2-219ENST00000555323 SLFN12LQ6IEE8 588 aa13.9□□□□□ -0.18
SYNE2-219ENST00000555323 SLC39A4Q6P5W5 647 aa13.9□□□□□ -0.18
SYNE2-219ENST00000555323 SLC27A1Q6PCB7 646 aa13.9□□□□□ -0.18
SYNE2-219ENST00000555323 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.9□□□□□ -0.18
SYNE2-219ENST00000555323 MYOCDQ8IZQ8 938 aa13.9□□□□□ -0.18
SYNE2-219ENST00000555323 PHOSPHO2Q8TCD6 241 aa13.9□□□□□ -0.18
SYNE2-219ENST00000555323 TOP1MTQ969P6 601 aa13.9□□□□□ -0.18
SYNE2-219ENST00000555323 UBE2OQ9C0C9 1292 aaKnown RBP13.9□□□□□ -0.18
SYNE2-219ENST00000555323 KCTD10Q9H3F6 313 aa13.9□□□□□ -0.18
SYNE2-219ENST00000555323 FAM105AQ9NUU6 356 aa13.9□□□□□ -0.18
SYNE2-219ENST00000555323 RNF216Q9NWF9 866 aaPredicted RBP13.9□□□□□ -0.18
SYNE2-219ENST00000555323 CGNQ9P2M7 1197 aaKnown RBP13.9□□□□□ -0.18
SYNE2-219ENST00000555323 GDAQ9Y2T3 454 aa13.9□□□□□ -0.18
SYNE2-219ENST00000555323 A0A0B4J269 797 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 ANKRD63C9JTQ0 380 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 PDXKO00764 312 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 HNRNPDLO14979 420 aaKnown RBP13.89□□□□□ -0.19
SYNE2-219ENST00000555323 CLDN3O15551 220 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 TGFB1I1O43294 461 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 ADSSP30520 456 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 PPP1R2P41236 205 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 PRCPP42785 496 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 LIG4P49917 911 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 WDR5P61964 334 aaKnown RBP13.89□□□□□ -0.19
SYNE2-219ENST00000555323 SHHQ15465 462 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 C9orf50Q5SZB4 431 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 MPZL3Q6UWV2 235 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 ZNF598Q86UK7 904 aaKnown RBP13.89□□□□□ -0.19
SYNE2-219ENST00000555323 ECHDC2Q86YB7 292 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 SYAP1Q96A49 352 aaPredicted RBP13.89□□□□□ -0.19
SYNE2-219ENST00000555323 ZBTB45Q96K62 511 aaPredicted RBP13.89□□□□□ -0.19
SYNE2-219ENST00000555323 ADPGKQ9BRR6 497 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 HAPLN2Q9GZV7 340 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 GBP3Q9H0R5 595 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 MTIF3Q9H2K0 278 aaKnown RBP13.89□□□□□ -0.19
SYNE2-219ENST00000555323 CXXC1Q9P0U4 656 aaPredicted RBP13.89□□□□□ -0.19
SYNE2-219ENST00000555323 TRAF3IP3Q9Y228 551 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 PCDHB2Q9Y5E7 798 aa13.89□□□□□ -0.19
SYNE2-219ENST00000555323 PPP1R3GB7ZBB8 358 aa13.88□□□□□ -0.19
SYNE2-219ENST00000555323 AMHP03971 560 aa13.88□□□□□ -0.19
SYNE2-219ENST00000555323 MCF2P10911 925 aa13.88□□□□□ -0.19
SYNE2-219ENST00000555323 GARTP22102 1010 aa13.88□□□□□ -0.19
SYNE2-219ENST00000555323 POU5F1Q01860 360 aaKnown RBP13.88□□□□□ -0.19
SYNE2-219ENST00000555323 DCAF4L1Q3SXM0 396 aa13.88□□□□□ -0.19
SYNE2-219ENST00000555323 ISM2Q6H9L7 571 aa13.88□□□□□ -0.19
SYNE2-219ENST00000555323 CAVIN1Q6NZI2 390 aaKnown RBP13.88□□□□□ -0.19
SYNE2-219ENST00000555323 FOXR2Q6PJQ5 311 aa13.88□□□□□ -0.19
SYNE2-219ENST00000555323 APBB1IPQ7Z5R6 666 aaPredicted RBP13.88□□□□□ -0.19
SYNE2-219ENST00000555323 CDR2LQ86X02 465 aaPredicted RBP13.88□□□□□ -0.19
SYNE2-219ENST00000555323 C12orf56Q8IXR9 622 aa13.88□□□□□ -0.19
SYNE2-219ENST00000555323 SYCP3Q8IZU3 236 aa13.88□□□□□ -0.19
SYNE2-219ENST00000555323 ADSSL1Q8N142 457 aa13.88□□□□□ -0.19
SYNE2-219ENST00000555323 SMG8Q8ND04 991 aaKnown RBP13.88□□□□□ -0.19
SYNE2-219ENST00000555323 BICD1Q96G01 975 aa13.88□□□□□ -0.19
SYNE2-219ENST00000555323 TCHPQ9BT92 498 aa13.88□□□□□ -0.19
SYNE2-219ENST00000555323 EIF2AQ9BY44 585 aaKnown RBP13.88□□□□□ -0.19
SYNE2-219ENST00000555323 TMEM161AQ9NX61 479 aa13.88□□□□□ -0.19
SYNE2-219ENST00000555323 TNRC18O15417 2968 aaPredicted RBP13.88□□□□□ -0.19
SYNE2-219ENST00000555323 ZMYM2Q9UBW7 1377 aa13.87□□□□□ -0.19
SYNE2-219ENST00000555323 BIN1O00499 593 aa13.87□□□□□ -0.19
SYNE2-219ENST00000555323 KIAA0391O15091 583 aaKnown RBP13.87□□□□□ -0.19
SYNE2-219ENST00000555323 FAM189A1O60320 539 aa13.87□□□□□ -0.19
SYNE2-219ENST00000555323 LETM1O95202 739 aaPredicted RBP13.87□□□□□ -0.19
SYNE2-219ENST00000555323 STAG3L1P0CL83 205 aa13.87□□□□□ -0.19
SYNE2-219ENST00000555323 ATF7P17544 494 aaPredicted RBP13.87□□□□□ -0.19
SYNE2-219ENST00000555323 KCNJ6P48051 423 aa13.87□□□□□ -0.19
SYNE2-219ENST00000555323 MYBPC2Q14324 1141 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms