RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 IGSF21Q96ID5 467 aa12.72□□□□□ -0.37
VPS33B-204ENST00000554660 VN1R3Q9BXE9 311 aa12.72□□□□□ -0.37
VPS33B-204ENST00000554660 NAT10Q9H0A0 1025 aaKnown RBP12.72□□□□□ -0.37
VPS33B-204ENST00000554660 GBP3Q9H0R5 595 aa12.72□□□□□ -0.37
VPS33B-204ENST00000554660 KCNF1Q9H3M0 494 aa12.72□□□□□ -0.37
VPS33B-204ENST00000554660 SFXN1Q9H9B4 322 aa12.72□□□□□ -0.37
VPS33B-204ENST00000554660 CYP26B1Q9NR63 512 aa12.72□□□□□ -0.37
VPS33B-204ENST00000554660 TBC1D13Q9NVG8 400 aa12.72□□□□□ -0.37
VPS33B-204ENST00000554660 TFIP11Q9UBB9 837 aaKnown RBP12.72□□□□□ -0.37
VPS33B-204ENST00000554660 DNAJB4Q9UDY4 337 aa12.72□□□□□ -0.37
VPS33B-204ENST00000554660 NAP1L2Q9ULW6 460 aaPredicted RBP12.72□□□□□ -0.37
VPS33B-204ENST00000554660 USTQ9Y2C2 406 aa12.72□□□□□ -0.37
VPS33B-204ENST00000554660 NID2Q14112 1375 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 GOLGA6L19H0YKK7 550 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 B4GALT3O60512 393 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 SSBP05455 408 aaKnown RBP eCLIP12.71□□□□□ -0.37
VPS33B-204ENST00000554660 AOC1P19801 751 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 PHKA2P46019 1235 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 ID4P47928 161 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 TBC1D8BQ0IIM8 1120 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 PTPN14Q15678 1187 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 CCDC149Q6ZUS6 474 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 CCDC105Q8IYK2 499 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 GJA10Q969M2 543 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 SH2D3AQ9BRG2 576 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 NRDE2Q9H7Z3 1164 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 DISC1Q9NRI5 854 aa12.71□□□□□ -0.37
VPS33B-204ENST00000554660 SEPT9Q9UHD8 586 aaPredicted RBP12.71□□□□□ -0.37
VPS33B-204ENST00000554660 PIN4Q9Y237 131 aaKnown RBP12.71□□□□□ -0.37
VPS33B-204ENST00000554660 MYO10Q9HD67 2058 aa12.71□□□□□ -0.38
VPS33B-204ENST00000554660 WDR81Q562E7 1941 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 A0A087WZ62 844 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 ESYT2A0FGR8 921 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 NARSO43776 548 aaKnown RBP12.7□□□□□ -0.38
VPS33B-204ENST00000554660 CDKL5O76039 1030 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 SLC11A1P49279 550 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 POLGP54098 1239 aaPredicted RBP12.7□□□□□ -0.38
VPS33B-204ENST00000554660 RNASELQ05823 741 aaKnown RBP12.7□□□□□ -0.38
VPS33B-204ENST00000554660 ANGPT1Q15389 498 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 MTERF2Q49AM1 385 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 TWF2Q6IBS0 349 aaKnown RBP12.7□□□□□ -0.38
VPS33B-204ENST00000554660 FAM173BQ6P4H8 233 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 GLB1LQ6UWU2 654 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 GPR149Q86SP6 731 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 DDX53Q86TM3 631 aaKnown RBP12.7□□□□□ -0.38
VPS33B-204ENST00000554660 LUZP1Q86V48 1076 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 CEP57L1Q8IYX8 460 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 SIX5Q8N196 739 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 ACSF2Q96CM8 615 aaPredicted RBP12.7□□□□□ -0.38
VPS33B-204ENST00000554660 TIGD1Q96MW7 591 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 FDXACB1Q9BRP7 624 aaPredicted RBP12.7□□□□□ -0.38
VPS33B-204ENST00000554660 ZMYND12Q9H0C1 365 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 UNC45AQ9H3U1 944 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 FBXL21Q9UKT6 434 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 DUSP12Q9UNI6 340 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 IRAK3Q9Y616 596 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 C2orf16Q68DN1 1984 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 DMXL1Q9Y485 3027 aa12.7□□□□□ -0.38
VPS33B-204ENST00000554660 FAM186AA6NE01 2351 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 MSH4O15457 936 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 GAS7O60861 476 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 TUBB4AP04350 444 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 GALTP07902 379 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 SFPQP23246 707 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS33B-204ENST00000554660 CLCN4P51793 760 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 RCAN1P53805 252 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 TDGQ13569 410 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 SNW1Q13573 536 aaKnown RBP12.69□□□□□ -0.38
VPS33B-204ENST00000554660 GIT2Q14161 759 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 NOMO2Q5JPE7 1267 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 OTOP3Q7RTS5 596 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 ERMP1Q7Z2K6 904 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 ZNF280BQ86YH2 543 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 ELOA2Q8IYF1 753 aaPredicted RBP12.69□□□□□ -0.38
VPS33B-204ENST00000554660 FBXO18Q8NFZ0 1043 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 USP28Q96RU2 1077 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 GCOM2Q9BZD3 368 aaPredicted RBP12.69□□□□□ -0.38
VPS33B-204ENST00000554660 TRIM5Q9C035 493 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 KCNK12Q9HB15 430 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 C6orf50Q9HD87 102 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 NRBP2Q9NSY0 501 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 FAM105AQ9NUU6 356 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 IMPACTQ9P2X3 320 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 PAXBP1Q9Y5B6 917 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 PTPRZ1P23471 2315 aaPredicted RBP12.69□□□□□ -0.38
VPS33B-204ENST00000554660 RIF1Q5UIP0 2472 aaKnown RBP12.69□□□□□ -0.38
VPS33B-204ENST00000554660 GVINP1Q7Z2Y8 2422 aa12.69□□□□□ -0.38
VPS33B-204ENST00000554660 STK36Q9NRP7 1315 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 DNAH14Q0VDD8 3507 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 FAM237AA0A1B0GTK4 181 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 KIF2AO00139 706 aaPredicted RBP12.68□□□□□ -0.38
VPS33B-204ENST00000554660 CTIFO43310 598 aaKnown RBP12.68□□□□□ -0.38
VPS33B-204ENST00000554660 EDIL3O43854 480 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 N4BP1O75113 896 aaKnown RBP12.68□□□□□ -0.38
VPS33B-204ENST00000554660 CFHP08603 1231 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 CNPP09543 421 aaKnown RBP12.68□□□□□ -0.38
VPS33B-204ENST00000554660 MYBP10242 640 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 FDPSP14324 419 aaKnown RBP12.68□□□□□ -0.38
VPS33B-204ENST00000554660 KLRC2P26717 231 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 CIITAP33076 1130 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms