RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 SYCP3Q8IZU3 236 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 LINC01599Q8WXQ3 324 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.42□□□□□ -0.263e-9■□□□□ 10
SHMT2-209ENST00000553949 TSPYL2Q9H2G4 693 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-209ENST00000553949 IKZF4Q9H2S9 585 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 PDZD7Q9H5P4 517 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 PTPRHQ9HD43 1115 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 RGS18Q9NS28 235 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 MAPK8IP1Q9UQF2 711 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 TNFSF13BQ9Y275 285 aa13.42□□□□□ -0.26
SHMT2-209ENST00000553949 ANKRD63C9JTQ0 380 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 EFCAB14O75071 495 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 TOM1L1O75674 476 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 BAIAP3O94812 1187 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 PROZP22891 400 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 PRCPP42785 496 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 KNOP1Q1ED39 458 aaKnown RBP13.41□□□□□ -0.26
SHMT2-209ENST00000553949 COBLL1Q53SF7 1204 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 UBXN11Q5T124 520 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 EEF1DP3Q658K8 133 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 SLC39A4Q6P5W5 647 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 SLC27A1Q6PCB7 646 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 OTOP2Q7RTS6 562 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 GUF1Q8N442 669 aaKnown RBP13.41□□□□□ -0.26
SHMT2-209ENST00000553949 ZBTB45Q96K62 511 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-209ENST00000553949 GDF15Q99988 308 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 TCHPQ9BT92 498 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 TRAIPQ9BWF2 469 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 C1orf112Q9NSG2 853 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 ANKFY1Q9P2R3 1169 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 ZMYM2Q9UBW7 1377 aa13.41□□□□□ -0.26
SHMT2-209ENST00000553949 SCN5AQ14524 2016 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 A0A0U1RQF3 1178 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-209ENST00000553949 TISP43B9A030 160 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 ABLIM1O14639 778 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 CLDN3O15551 220 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 TGFB1I1O43294 461 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 NPTXRO95502 500 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 NLRP12P59046 1061 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 FAM189BP81408 668 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 ZNF568Q3ZCX4 644 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 SLFN12LQ6IEE8 588 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 MPZL3Q6UWV2 235 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.4□□□□□ -0.264e-7■□□□□ 9.3
SHMT2-209ENST00000553949 SLC24A5Q71RS6 500 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 HS2ST1Q7LGA3 356 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 APBB1IPQ7Z5R6 666 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-209ENST00000553949 ZBTB33Q86T24 672 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 ADSSL1Q8N142 457 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 HERVK_113Q902F9 699 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 ADPGKQ9BRR6 497 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 EIF2AQ9BY44 585 aaKnown RBP13.4□□□□□ -0.26
SHMT2-209ENST00000553949 TRIM6Q9C030 488 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-209ENST00000553949 GBP3Q9H0R5 595 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 KCTD10Q9H3F6 313 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 FAM105AQ9NUU6 356 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 PCDHB2Q9Y5E7 798 aa13.4□□□□□ -0.26
SHMT2-209ENST00000553949 MYH11P35749 1972 aa13.4□□□□□ -0.27
SHMT2-209ENST00000553949 TNRC18O15417 2968 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-209ENST00000553949 PPP1R3GB7ZBB8 358 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 C9IYK1 514 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 LETM1O95202 739 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-209ENST00000553949 MCF2P10911 925 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 CD44P16070 742 aaKnown RBP13.39□□□□□ -0.27
SHMT2-209ENST00000553949 ADSSP30520 456 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 PPP1R2P41236 205 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 MATR3P43243 847 aaKnown RBP eCLIP13.39□□□□□ -0.27
SHMT2-209ENST00000553949 RAB27AP51159 221 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 WDR5P61964 334 aaKnown RBP13.39□□□□□ -0.27
SHMT2-209ENST00000553949 SNRPFP62306 86 aaKnown RBP13.39□□□□□ -0.27
SHMT2-209ENST00000553949 MCL1Q07820 350 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 STIM1Q13586 685 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 NOLC1Q14978 699 aaKnown RBP eCLIP13.39□□□□□ -0.27
SHMT2-209ENST00000553949 DCAF4L1Q3SXM0 396 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 SASS6Q6UVJ0 657 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 MLKLQ8NB16 471 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 GOLGA5Q8TBA6 731 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 UBE2OQ9C0C9 1292 aaKnown RBP13.39□□□□□ -0.27
SHMT2-209ENST00000553949 HAPLN2Q9GZV7 340 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 CDT1Q9H211 546 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 SEMA6BQ9H3T3 888 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 AGPAT3Q9NRZ7 376 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 TYW1Q9NV66 732 aaKnown RBP13.39□□□□□ -0.27
SHMT2-209ENST00000553949 CXXC1Q9P0U4 656 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-209ENST00000553949 STYXL1Q9Y6J8 313 aa13.39□□□□□ -0.27
SHMT2-209ENST00000553949 A0A0B4J269 797 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 ZBBXA8MT70 800 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 PDXKO00764 312 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 PSMA7O14818 248 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 ZNF623O75123 536 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 AMHP03971 560 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 HARSP12081 509 aaKnown RBP13.38□□□□□ -0.27
SHMT2-209ENST00000553949 SKIP12755 728 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 IBSPP21815 317 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-209ENST00000553949 KCNJ6P48051 423 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 SHHQ15465 462 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 DPCR1Q3MIW9 517 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 ZSCAN23Q3MJ62 389 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 C9orf50Q5SZB4 431 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms