RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 CBWD3Q5JTY5 395 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 CBWD5Q5RIA9 395 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 CDCA2Q69YH5 1023 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-207ENST00000553837 CAPRIN2Q6IMN6 1127 aaKnown RBP13.2□□□□□ -0.3
SHMT2-207ENST00000553837 FAM160B2Q86V87 743 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 RTKN2Q8IZC4 609 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 TAF4BQ92750 862 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 INPP4AQ96PE3 977 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-207ENST00000553837 NACC1Q96RE7 527 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 MXRA8Q9BRK3 442 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 DMAC2Q9NW81 257 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.2□□□□□ -0.3
SHMT2-207ENST00000553837 NOP53Q9NZM5 478 aaKnown RBP13.2□□□□□ -0.3
SHMT2-207ENST00000553837 TMEM59LQ9UK28 342 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 SLC12A4Q9UP95 1085 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 TISP43B9A030 160 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 DDX3XO00571 662 aaKnown RBP eCLIP13.2□□□□□ -0.31e-14■■□□□ 13.5
SHMT2-207ENST00000553837 DHX15O43143 795 aaKnown RBP13.2□□□□□ -0.3
SHMT2-207ENST00000553837 ASAP2O43150 1006 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 EGFRP00533 1210 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 TRIM49P0CI25 452 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 TRIM49CP0CI26 452 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 CYP2J2P51589 502 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 MAGOHP61326 146 aaKnown RBP13.2□□□□□ -0.3
SHMT2-207ENST00000553837 MAP3K10Q02779 954 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 SPP2Q13103 211 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 ODR4Q5SWX8 454 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 ERMARDQ5T6L9 678 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 FKBP1CQ5VVH2 108 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 MAEAQ7L5Y9 396 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 FAM178BQ8IXR5 827 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 KCTD17Q8N5Z5 321 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 UBLCP1Q8WVY7 318 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-207ENST00000553837 MAGOHBQ96A72 148 aaKnown RBP13.2□□□□□ -0.3
SHMT2-207ENST00000553837 XPO6Q96QU8 1125 aaKnown RBP13.2□□□□□ -0.3
SHMT2-207ENST00000553837 STRA6Q9BX79 667 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 TEKT3Q9BXF9 490 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 ZNF341Q9BYN7 854 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 DEFB129Q9H1M3 183 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 AGPAT3Q9NRZ7 376 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 FBXL5Q9UKA1 691 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 CCPG1Q9ULG6 757 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 RPTORQ8N122 1335 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 FAM170AA1A519 330 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 BACH1O14867 736 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 HIP1RO75146 1068 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 GFPT2O94808 682 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 ICAM1P05362 532 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 ZBTB48P10074 688 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-207ENST00000553837 ECHS1P30084 290 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 PSMC2P35998 433 aaKnown RBP13.19□□□□□ -0.3
SHMT2-207ENST00000553837 CXCL9Q07325 125 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 ZNF268Q14587 947 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-207ENST00000553837 PLS1Q14651 629 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 NFIL3Q16649 462 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 ALKBH5Q6P6C2 394 aaKnown RBP13.19□□□□□ -0.3
SHMT2-207ENST00000553837 FAM83AQ86UY5 434 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 PNMA8AQ86V59 439 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-207ENST00000553837 RPUSD2Q8IZ73 545 aaKnown RBP13.19□□□□□ -0.3
SHMT2-207ENST00000553837 LRRC57Q8N9N7 239 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 MTMR14Q8NCE2 650 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 SH2D3AQ9BRG2 576 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 GPR88Q9GZN0 384 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 KCNH7Q9NS40 1196 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 BCS1LQ9Y276 419 aa13.19□□□□□ -0.3
SHMT2-207ENST00000553837 GTPBP10A4D1E9 387 aaKnown RBP13.18□□□□□ -0.3
SHMT2-207ENST00000553837 TMEM150BA6NC51 233 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 BTNL10A8MVZ5 291 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 LIN7AO14910 233 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-207ENST00000553837 FMO5P49326 533 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 MRPS9P82933 396 aaKnown RBP13.18□□□□□ -0.3
SHMT2-207ENST00000553837 KCTD19Q17RG1 926 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-207ENST00000553837 LNX1Q8TBB1 728 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-207ENST00000553837 L3MBTL3Q96JM7 780 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-207ENST00000553837 FAM129AQ9BZQ8 928 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 ZNRF3Q9ULT6 936 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 CORO1CQ9ULV4 474 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-207ENST00000553837 FER1L6Q2WGJ9 1857 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 MYH11P35749 1972 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 LRRN2O75325 713 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 EIF3BP55884 814 aaKnown RBP13.18□□□□□ -0.3
SHMT2-207ENST00000553837 PPARDQ03181 441 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 KRT71Q3SY84 523 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 PIGWQ7Z7B1 504 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 RDH13Q8NBN7 331 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 ZSWIM2Q8NEG5 633 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 PBKQ96KB5 322 aa13.18□□□□□ -0.3
SHMT2-207ENST00000553837 SUDS3Q9H7L9 328 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-207ENST00000553837 BZW2Q9Y6E2 419 aaKnown RBP13.18□□□□□ -0.3
SHMT2-207ENST00000553837 ARHGEF35A5YM69 484 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 EVI5O60447 810 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 CTNND1O60716 968 aaKnown RBP13.17□□□□□ -0.3
SHMT2-207ENST00000553837 MUTP22033 750 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 CCND1P24385 295 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 MIS18BP1Q6P0N0 1132 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 PADI6Q6TGC4 694 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 TBC1D1Q86TI0 1168 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-207ENST00000553837 CPXCR1Q8N123 301 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 SCFD2Q8WU76 684 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 TEPSINQ96N21 525 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms