RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 NFATC3Q12968 1075 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 DAG1Q14118 895 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 L1TD1Q5T7N2 865 aaKnown RBP6.92□□□□□ -1.3
SCFD1-208ENST00000553278 CD276Q5ZPR3 534 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 LIX1LQ8IVB5 337 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 RHOT1Q8IXI2 618 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 ZNF527Q8NB42 609 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 PDZD8Q8NEN9 1154 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 CCDC120Q96HB5 630 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 COLEC11Q9BWP8 271 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 C14orf93Q9H972 538 aaKnown RBP6.92□□□□□ -1.3
SCFD1-208ENST00000553278 EPB41L4AQ9HCS5 686 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-208ENST00000553278 TDP1Q9NUW8 608 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 DTLQ9NZJ0 730 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 KCMF1Q9P0J7 381 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 DBR1Q9UK59 544 aaKnown RBP6.92□□□□□ -1.3
SCFD1-208ENST00000553278 GPR52Q9Y2T5 361 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 SLC4A7Q9Y6M7 1214 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 SRGAP3O43295 1099 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 CUTAO60888 179 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 CSTBP04080 98 aaKnown RBP6.91□□□□□ -1.3
SCFD1-208ENST00000553278 PARP1P09874 1014 aaKnown RBP6.91□□□□□ -1.3
SCFD1-208ENST00000553278 FOSL1P15407 271 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 DDX10Q13206 875 aaKnown RBP6.91□□□□□ -1.3
SCFD1-208ENST00000553278 KIR3DS1Q14943 382 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 CNGA2Q16280 664 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 HIBCHQ6NVY1 386 aaPredicted RBP6.91□□□□□ -1.3
SCFD1-208ENST00000553278 HEATR3Q7Z4Q2 680 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 GPR156Q8NFN8 814 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 OR2I1PQ8NGU4 316 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 ZSCAN18Q8TBC5 510 aaPredicted RBP6.91□□□□□ -1.3
SCFD1-208ENST00000553278 TOE1Q96GM8 510 aaKnown RBP6.91□□□□□ -1.3
SCFD1-208ENST00000553278 CLPTM1LQ96KA5 538 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 TTLL2Q9BWV7 592 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 AMNQ9BXJ7 453 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 RXFP1Q9HBX9 757 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 SLC39A2Q9NP94 309 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 CNNM1Q9NRU3 951 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 GALNT8Q9NY28 637 aa6.91□□□□□ -1.3
SCFD1-208ENST00000553278 LRRFIP2Q9Y608 721 aaKnown RBP6.91□□□□□ -1.3
SCFD1-208ENST00000553278 LRRC14BA6NHZ5 514 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 NOTOA8MTQ0 251 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 M0R3H8 397 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 APOL1O14791 398 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 FFAR2O15552 330 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 SKAP2O75563 359 aaPredicted RBP6.9□□□□□ -1.3
SCFD1-208ENST00000553278 ENDOD1O94919 500 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 CYBBP04839 570 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 THP07101 528 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 ENO2P09104 434 aaPredicted RBP6.9□□□□□ -1.3
SCFD1-208ENST00000553278 FAM163BP0C2L3 166 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 BRAFP15056 766 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 CHRNA4P43681 627 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 GATA4P43694 442 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 HK2P52789 917 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 CDC42EP1Q00587 391 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 ZP2Q05996 745 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 PMS2P11Q13670 270 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 PLS1Q14651 629 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 MZT2AQ6P582 158 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 PAQR3Q6TCH7 311 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 LRSAM1Q6UWE0 723 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 PDZD4Q76G19 769 aaPredicted RBP6.9□□□□□ -1.3
SCFD1-208ENST00000553278 BMP8AQ7Z5Y6 402 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 SUCLG2Q96I99 432 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 MANSC1Q9H8J5 431 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 PNPOQ9NVS9 261 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 RRN3Q9NYV6 651 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 HSPBP1Q9NZL4 362 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 PCDHA3Q9Y5H8 950 aa6.9□□□□□ -1.3
SCFD1-208ENST00000553278 ZC3H12DA2A288 527 aaKnown RBP6.89□□□□□ -1.31
SCFD1-208ENST00000553278 ZNF839A8K0R7 811 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 MYO1FO00160 1098 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 SEC24DO94855 1032 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-208ENST00000553278 LDHCP07864 332 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 DBHP09172 617 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 KITP10721 976 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 TYRP14679 529 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 FSTP19883 344 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 HSPA7P48741 367 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 FMO1Q01740 532 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 MGAT5Q09328 741 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 GRM1Q13255 1194 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 DACT2Q5SW24 774 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 CIAPIN1Q6FI81 312 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 KRBA2Q6ZNG9 492 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 RSPH3Q86UC2 560 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 CD163Q86VB7 1156 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 SH2D3CQ8N5H7 860 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 MSL3Q8N5Y2 521 aaKnown RBP6.89□□□□□ -1.31
SCFD1-208ENST00000553278 NAXEQ8NCW5 288 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 IL17REQ8NFR9 667 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.89□□□□□ -1.31
SCFD1-208ENST00000553278 IGDCC4Q8TDY8 1250 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 TRAPPC12Q8WVT3 735 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 TBC1D20Q96BZ9 403 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 SAMD11Q96NU1 681 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 BTBD2Q9BX70 525 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 OR10A5Q9H207 317 aa6.89□□□□□ -1.31
SCFD1-208ENST00000553278 SARS2Q9NP81 518 aaKnown RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms