RNA–Protein interactions for RNA: ENST00000552301.1

PRPF40B-216, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 912 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-216ENST00000552301 ARHGAP28Q9P2N2 729 aa20.34■□□□□ 0.85
PRPF40B-216ENST00000552301 RCOR1Q9UKL0 485 aa20.34■□□□□ 0.85
PRPF40B-216ENST00000552301 PCDHA7Q9UN72 937 aa20.34■□□□□ 0.85
PRPF40B-216ENST00000552301 KIAA1671Q9BY89 1806 aa20.33■□□□□ 0.85
PRPF40B-216ENST00000552301 C5orf67F2Z3F1 127 aa20.33■□□□□ 0.85
PRPF40B-216ENST00000552301 RNASELQ05823 741 aaKnown RBP20.33■□□□□ 0.85
PRPF40B-216ENST00000552301 NAALADL2Q58DX5 795 aa20.33■□□□□ 0.85
PRPF40B-216ENST00000552301 NOMO2Q5JPE7 1267 aa20.33■□□□□ 0.85
PRPF40B-216ENST00000552301 ATF7IP2Q5U623 682 aa20.33■□□□□ 0.85
PRPF40B-216ENST00000552301 SHC4Q6S5L8 630 aa20.33■□□□□ 0.85
PRPF40B-216ENST00000552301 PPM1EQ8WY54 764 aa20.33■□□□□ 0.85
PRPF40B-216ENST00000552301 PDZD7Q9H5P4 517 aa20.33■□□□□ 0.85
PRPF40B-216ENST00000552301 PRRC2BQ5JSZ5 2229 aaKnown RBP20.33■□□□□ 0.84
PRPF40B-216ENST00000552301 MEIS3P2A8K0S8 358 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 K7ENM7 598 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 LPXNO60711 386 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 LINC00271P0C7V0 271 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 GIT2Q14161 759 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 DCAF4L1Q3SXM0 396 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 AXDND1Q5T1B0 1012 aaPredicted RBP20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 AGMOQ6ZNB7 445 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 DYMQ7RTS9 669 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 THNSL1Q8IYQ7 743 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 SMG8Q8ND04 991 aaKnown RBP20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 LEO1Q8WVC0 666 aaPredicted RBP20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 P2RX5Q93086 422 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 DHX58Q96C10 678 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 ZNF558Q96NG5 402 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 SCAND2PQ9GZW5 306 aaPredicted RBP20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 CUEDC2Q9H467 287 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 NXF3Q9H4D5 531 aaKnown RBP20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 LMCD1Q9NZU5 365 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 HCSTQ9UBK5 93 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 HES2Q9Y543 173 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 MTCH2Q9Y6C9 303 aa20.32■□□□□ 0.84
PRPF40B-216ENST00000552301 A0A087X0B3 334 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 OFD1O75665 1012 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 POU3F3P20264 500 aaPredicted RBP20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 PPM1AP35813 382 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 CCDC85BQ15834 202 aaPredicted RBP20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 FAM178BQ8IXR5 827 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 IQUBQ8NA54 791 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 KLHL23Q8NBE8 558 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 COLGALT1Q8NBJ5 622 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 TMEM161BQ8NDZ6 487 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 MRPL38Q96DV4 380 aaKnown RBP20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 FAM193BQ96PV7 902 aaPredicted RBP20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 PYM1Q9BRP8 204 aaKnown RBP20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 NTPCRQ9BSD7 190 aaKnown RBP20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 LRRC27Q9C0I9 530 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 LMAN2LQ9H0V9 348 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 KANSL3Q9P2N6 904 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 PARP2Q9UGN5 583 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 USP20Q9Y2K6 914 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 CHD9Q3L8U1 2897 aa20.31■□□□□ 0.84
PRPF40B-216ENST00000552301 CARNS1A5YM72 827 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 TTLL13PA6NNM8 815 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 SCP2P22307 547 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 ZNF131P52739 623 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 ZNF568Q3ZCX4 644 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 TIGD5Q53EQ6 642 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 NT5DC1Q5TFE4 455 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 SLC17A8Q8NDX2 589 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 DDX12PQ92771 950 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 BICD1Q96G01 975 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 RPS6KC1Q96S38 1066 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 GBP3Q9H0R5 595 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 CWH43Q9H720 699 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 TBC1D13Q9NVG8 400 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 TNFSF13BQ9Y275 285 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 GIT1Q9Y2X7 761 aa20.3■□□□□ 0.84
PRPF40B-216ENST00000552301 MYMKA6NI61 221 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 TRAK2O60296 914 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 ZC3H11AO75152 810 aaKnown RBP eCLIP20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 CSPG5O95196 566 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 EDN1P05305 212 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 MAPTP10636 758 aaKnown RBP20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 IDEP14735 1019 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 ABCD1P33897 745 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 MLH1P40692 756 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 ALDH7A1P49419 539 aaKnown RBP20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 NCKAP1LP55160 1127 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 AMPD3Q01432 767 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 SKIV2LQ15477 1246 aaKnown RBP20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 RESP18Q5W5W9 173 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 EEF1DP3Q658K8 133 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 KCNT2Q6UVM3 1135 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 LRRC55Q6ZSA7 311 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 HAUS6Q7Z4H7 955 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 CHAMP1Q96JM3 812 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 GAD1Q99259 594 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 TCHPQ9BT92 498 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 TARS2Q9BW92 718 aaKnown RBP20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 RNF39Q9H2S5 420 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 TNMDQ9H2S6 317 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 MAGEF1Q9HAY2 307 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 ALG13Q9NP73 1137 aaKnown RBP20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 PLAGL2Q9UPG8 496 aa20.29■□□□□ 0.84
PRPF40B-216ENST00000552301 GRM6O15303 877 aa20.28■□□□□ 0.84
PRPF40B-216ENST00000552301 POLR2DO15514 142 aaKnown RBP20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms