RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 XKR3Q5GH77 459 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 CCNI2Q6ZMN8 369 aaPredicted RBP16.05■□□□□ 0.16
CUX1-214ENST00000550008 TMEM35BQ8NCS4 154 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 CCDC110Q8TBZ0 833 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 MTMR9Q96QG7 549 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 DISP2A7MBM2 1401 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 FAM208AQ9UK61 1670 aaKnown RBP16.05■□□□□ 0.16
CUX1-214ENST00000550008 MIF4GDA9UHW6 222 aaKnown RBP16.05■□□□□ 0.16
CUX1-214ENST00000550008 SLC16A3O15427 465 aaKnown RBP16.05■□□□□ 0.16
CUX1-214ENST00000550008 ARHGAP25P42331 645 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 MAGOHP61326 146 aaKnown RBP16.05■□□□□ 0.16
CUX1-214ENST00000550008 CUL1Q13616 776 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 WDR72Q3MJ13 1102 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 CCDC38Q502W7 563 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 PPM1EQ8WY54 764 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 MTMR8Q96EF0 704 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 RUNDC3BQ96NL0 473 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 SMC6Q96SB8 1091 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 SPC25Q9HBM1 224 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 PDE4DIPQ5VU43 2346 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 SYNGAP1Q96PV0 1343 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 A0A1W2PQJ5 194 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 CCDC137Q6PK04 289 aaKnown RBP16.05■□□□□ 0.16
CUX1-214ENST00000550008 TRIM59Q8IWR1 403 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 CCNYQ8ND76 341 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 TNFRSF25Q93038 417 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 TAF1DQ9H5J8 278 aaPredicted RBP16.05■□□□□ 0.16
CUX1-214ENST00000550008 F5H423 210 aaPredicted RBP16.05■□□□□ 0.16
CUX1-214ENST00000550008 RAD51CO43502 376 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 STK10O94804 968 aaKnown RBP16.05■□□□□ 0.16
CUX1-214ENST00000550008 HSPA6P17066 643 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 CIITAP33076 1130 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 TMEM62Q0P6H9 643 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 GLE1Q53GS7 698 aaKnown RBP16.05■□□□□ 0.16
CUX1-214ENST00000550008 CFAP157Q5JU67 520 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 C6orf163Q5TEZ5 329 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 BTBD6Q96KE9 485 aa16.05■□□□□ 0.16
CUX1-214ENST00000550008 TOPORSQ9NS56 1045 aaPredicted RBP16.05■□□□□ 0.16
CUX1-214ENST00000550008 SYCP2LQ5T4T6 812 aa16.04■□□□□ 0.16
CUX1-214ENST00000550008 CEP128Q6ZU80 1094 aa16.04■□□□□ 0.16
CUX1-214ENST00000550008 RPS6KC1Q96S38 1066 aa16.04■□□□□ 0.16
CUX1-214ENST00000550008 MOV10L1Q9BXT6 1211 aaKnown RBP16.04■□□□□ 0.16
CUX1-214ENST00000550008 IKZF4Q9H2S9 585 aa16.04■□□□□ 0.16
CUX1-214ENST00000550008 CRY2Q49AN0 593 aa16.04■□□□□ 0.16
CUX1-214ENST00000550008 FYB2Q5VWT5 728 aa16.04■□□□□ 0.16
CUX1-214ENST00000550008 MMP19Q99542 508 aa16.04■□□□□ 0.16
CUX1-214ENST00000550008 MMTAG2Q9BU76 263 aaKnown RBP16.04■□□□□ 0.16
CUX1-214ENST00000550008 IDI2Q9BXS1 227 aa16.04■□□□□ 0.16
CUX1-214ENST00000550008 THAP2Q9H0W7 228 aa16.04■□□□□ 0.16
CUX1-214ENST00000550008 RGPD2P0DJD1 1756 aa16.04■□□□□ 0.16
CUX1-214ENST00000550008 A6NJR5 290 aa16.04■□□□□ 0.16
CUX1-214ENST00000550008 EMC2Q15006 297 aa16.04■□□□□ 0.16
CUX1-214ENST00000550008 DARS2Q6PI48 645 aaKnown RBP16.04■□□□□ 0.16
CUX1-214ENST00000550008 OSGEPQ9NPF4 335 aa16.04■□□□□ 0.16
CUX1-214ENST00000550008 ZNF571Q7Z3V5 609 aaPredicted RBP16.03■□□□□ 0.16
CUX1-214ENST00000550008 SYTL5Q8TDW5 730 aaPredicted RBP16.03■□□□□ 0.16
CUX1-214ENST00000550008 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.03■□□□□ 0.16
CUX1-214ENST00000550008 MEIS2O14770 477 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 SLITRK3O94933 977 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 PLA2G4AP47712 749 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 GMCL1P1Q8NEA9 526 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 TACO1Q9BSH4 297 aaKnown RBP16.03■□□□□ 0.16
CUX1-214ENST00000550008 AP5M1Q9H0R1 490 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 KIAA1586Q9HCI6 787 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 HEY1Q9Y5J3 304 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 ALG6Q9Y672 507 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 PGK2P07205 417 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 ACTR2P61160 394 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 GUCY1A3Q02108 690 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 MAP7D3Q8IWC1 876 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 SREK1Q8WXA9 508 aaKnown RBP16.03■□□□□ 0.16
CUX1-214ENST00000550008 ARHGEF2Q92974 986 aaKnown RBP16.03■□□□□ 0.16
CUX1-214ENST00000550008 MRPL4Q9BYD3 311 aaKnown RBP16.03■□□□□ 0.16
CUX1-214ENST00000550008 NACA2Q9H009 215 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 SNX25Q9H3E2 840 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 EXOC1LA0A1B0GW35 172 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 CSDE1O75534 798 aaKnown RBP16.03■□□□□ 0.16
CUX1-214ENST00000550008 CLTAP09496 248 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 WEE2P0C1S8 567 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 CCDC14Q49A88 953 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 ZNF720Q7Z2F6 126 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 TRAPPC11Q7Z392 1133 aa16.03■□□□□ 0.16
CUX1-214ENST00000550008 PPP1R11O60927 126 aaPredicted RBP16.02■□□□□ 0.16
CUX1-214ENST00000550008 FGRP09769 529 aa16.02■□□□□ 0.16
CUX1-214ENST00000550008 H2AFXP16104 143 aaPredicted RBP16.02■□□□□ 0.16
CUX1-214ENST00000550008 FGFR4P22455 802 aa16.02■□□□□ 0.16
CUX1-214ENST00000550008 GPC3P51654 580 aa16.02■□□□□ 0.16
CUX1-214ENST00000550008 ECM1Q16610 540 aa16.02■□□□□ 0.16
CUX1-214ENST00000550008 TCP11Q8WWU5 503 aa16.02■□□□□ 0.16
CUX1-214ENST00000550008 SAYSD1Q9NPB0 183 aa16.02■□□□□ 0.16
CUX1-214ENST00000550008 AFDNP55196 1824 aaKnown RBP16.02■□□□□ 0.16
CUX1-214ENST00000550008 ZSCAN5CA6NGD5 496 aaPredicted RBP16.02■□□□□ 0.16
CUX1-214ENST00000550008 MCF2LO15068 1137 aa16.02■□□□□ 0.16
CUX1-214ENST00000550008 PRPSAP2O60256 369 aa16.02■□□□□ 0.16
CUX1-214ENST00000550008 FDX1P10109 184 aa16.02■□□□□ 0.16
CUX1-214ENST00000550008 COMTP21964 271 aa16.02■□□□□ 0.16
CUX1-214ENST00000550008 TTLL4Q14679 1199 aa16.02■□□□□ 0.16
CUX1-214ENST00000550008 MMS22LQ6ZRQ5 1243 aa16.02■□□□□ 0.16
CUX1-214ENST00000550008 P3H4Q92791 437 aa16.02■□□□□ 0.16
CUX1-214ENST00000550008 PDCD2LQ9BRP1 358 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms