RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 DGAT1O75907 488 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 ATP11AP98196 1134 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 FUT2Q10981 343 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 ABI1Q8IZP0 508 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 CCDC197Q8NCU1 140 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 FAM163AQ96GL9 167 aaPredicted RBP17.41■□□□□ 0.38
CUX1-213ENST00000549414 SNX25Q9H3E2 840 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 HACL1Q9UJ83 578 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 SCINQ9Y6U3 715 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 MED7O43513 233 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 INHBAP08476 426 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 CXCL9Q07325 125 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 VPS52Q8N1B4 723 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 STMN2Q93045 179 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 EHD4Q9H223 541 aa17.41■□□□□ 0.38
CUX1-213ENST00000549414 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.41■□□□□ 0.389e-8■■■■■ 27.8
CUX1-213ENST00000549414 VGLL3A8MV65 326 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 PRPSAP2O60256 369 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 SCP2P22307 547 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 SLC51AQ86UW1 340 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 CCDC125Q86Z20 511 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 LRRC8CQ8TDW0 803 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 CBWD1Q9BRT8 395 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 CELF4Q9BZC1 486 aaKnown RBP17.4■□□□□ 0.38
CUX1-213ENST00000549414 ABCD1P33897 745 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 TBX2Q13207 712 aaPredicted RBP17.4■□□□□ 0.38
CUX1-213ENST00000549414 SEZ6Q53EL9 994 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 TCP11Q8WWU5 503 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 CACNA1FO60840 1977 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 FAM237AA0A1B0GTK4 181 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 PODXLO00592 558 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 KRT14P02533 472 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 TROVE2P10155 538 aaKnown RBP eCLIP17.4■□□□□ 0.38
CUX1-213ENST00000549414 HOXA10P31260 410 aaPredicted RBP17.4■□□□□ 0.38
CUX1-213ENST00000549414 MRPS9P82933 396 aaKnown RBP17.4■□□□□ 0.38
CUX1-213ENST00000549414 XKR3Q5GH77 459 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 OR2W6PQ8NHA6 318 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 FAM118BQ9BPY3 351 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 SAYSD1Q9NPB0 183 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 PNMA3Q9UL41 463 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 TMX2Q9Y320 296 aa17.4■□□□□ 0.38
CUX1-213ENST00000549414 GRID2IPA4D2P6 1211 aa17.39■□□□□ 0.38
CUX1-213ENST00000549414 PON1P27169 355 aa17.39■□□□□ 0.38
CUX1-213ENST00000549414 DACT2Q5SW24 774 aa17.39■□□□□ 0.38
CUX1-213ENST00000549414 CCDC62Q6P9F0 684 aa17.39■□□□□ 0.38
CUX1-213ENST00000549414 GMCL1Q96IK5 515 aa17.39■□□□□ 0.38
CUX1-213ENST00000549414 FAM167AQ96KS9 214 aa17.39■□□□□ 0.38
CUX1-213ENST00000549414 NAGPAQ9UK23 515 aa17.39■□□□□ 0.38
CUX1-213ENST00000549414 TARSL2A2RTX5 802 aaKnown RBP17.39■□□□□ 0.37
CUX1-213ENST00000549414 NDC80O14777 642 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 RAD51CO43502 376 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 MYO1EQ12965 1108 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 SHROOM1Q2M3G4 852 aaPredicted RBP17.39■□□□□ 0.37
CUX1-213ENST00000549414 C2CD6Q53TS8 623 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 AKT1S1Q96B36 256 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 PIK3R2O00459 728 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 FDX1P10109 184 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 NAA25Q14CX7 972 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 TKFCQ3LXA3 575 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 CCDC38Q502W7 563 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 TMEM150BA6NC51 233 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 CIITAP33076 1130 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 SURF1Q15526 300 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 ADAM33Q9BZ11 813 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 SLC38A10Q9HBR0 1119 aa17.39■□□□□ 0.37
CUX1-213ENST00000549414 FOXN3O00409 490 aaPredicted RBP17.38■□□□□ 0.37
CUX1-213ENST00000549414 ICAM1P05362 532 aa17.38■□□□□ 0.37
CUX1-213ENST00000549414 FAM133BQ5BKY9 247 aaKnown RBP17.38■□□□□ 0.37
CUX1-213ENST00000549414 CBWD2Q8IUF1 395 aa17.38■□□□□ 0.37
CUX1-213ENST00000549414 LRRC71Q8N4P6 559 aa17.38■□□□□ 0.37
CUX1-213ENST00000549414 TARS2Q9BW92 718 aaKnown RBP17.38■□□□□ 0.37
CUX1-213ENST00000549414 MRPL4Q9BYD3 311 aaKnown RBP17.38■□□□□ 0.37
CUX1-213ENST00000549414 GPC3P51654 580 aa17.38■□□□□ 0.37
CUX1-213ENST00000549414 SOX10P56693 466 aa17.38■□□□□ 0.37
CUX1-213ENST00000549414 SARNPP82979 210 aaKnown RBP17.38■□□□□ 0.37
CUX1-213ENST00000549414 GUCY1A3Q02108 690 aa17.38■□□□□ 0.37
CUX1-213ENST00000549414 ELMO3Q96BJ8 720 aa17.38■□□□□ 0.37
CUX1-213ENST00000549414 TXNP10599 105 aaKnown RBP17.38■□□□□ 0.37
CUX1-213ENST00000549414 CA4P22748 312 aa17.38■□□□□ 0.37
CUX1-213ENST00000549414 PSMC4P43686 418 aa17.38■□□□□ 0.37
CUX1-213ENST00000549414 KCNJ1P48048 391 aa17.38■□□□□ 0.37
CUX1-213ENST00000549414 DMGDHQ9UI17 866 aaKnown RBP17.38■□□□□ 0.37
CUX1-213ENST00000549414 HEY1Q9Y5J3 304 aa17.38■□□□□ 0.37
CUX1-213ENST00000549414 UBE4BO95155 1302 aa17.38■□□□□ 0.37
CUX1-213ENST00000549414 EIF3BP55884 814 aaKnown RBP17.37■□□□□ 0.37
CUX1-213ENST00000549414 WDR72Q3MJ13 1102 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 NBPF12Q5TAG4 269 aaPredicted RBP17.37■□□□□ 0.37
CUX1-213ENST00000549414 EXOC8Q8IYI6 725 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 MOV10L1Q9BXT6 1211 aaKnown RBP17.37■□□□□ 0.37
CUX1-213ENST00000549414 GINM1Q9NU53 330 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 EML1O00423 815 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 RTN2O75298 545 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 SUN1O94901 812 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 H2AFXP16104 143 aaPredicted RBP17.37■□□□□ 0.37
CUX1-213ENST00000549414 PMS2P54278 862 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 PSMC1P62191 440 aaKnown RBP17.37■□□□□ 0.37
CUX1-213ENST00000549414 NUGGCQ68CJ6 796 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 TRAPPC11Q7Z392 1133 aa17.37■□□□□ 0.37
CUX1-213ENST00000549414 SRRM1Q8IYB3 904 aaKnown RBP17.37■□□□□ 0.37
CUX1-213ENST00000549414 EIF3DO15371 548 aaKnown RBP eCLIP17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms