RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 HSPH1Q92598 858 aa16.77■□□□□ 0.28
CUX1-211ENST00000546411 PODXLO00592 558 aa16.77■□□□□ 0.28
CUX1-211ENST00000546411 PLS3P13797 630 aa16.77■□□□□ 0.28
CUX1-211ENST00000546411 COMTP21964 271 aa16.77■□□□□ 0.28
CUX1-211ENST00000546411 ATP11AP98196 1134 aa16.77■□□□□ 0.28
CUX1-211ENST00000546411 HIBCHQ6NVY1 386 aaPredicted RBP16.77■□□□□ 0.28
CUX1-211ENST00000546411 ZNF507Q8TCN5 953 aa16.77■□□□□ 0.28
CUX1-211ENST00000546411 DEFB129Q9H1M3 183 aa16.77■□□□□ 0.28
CUX1-211ENST00000546411 SAYSD1Q9NPB0 183 aa16.77■□□□□ 0.28
CUX1-211ENST00000546411 HOXC10Q9NYD6 342 aa16.77■□□□□ 0.28
CUX1-211ENST00000546411 NOD1Q9Y239 953 aa16.77■□□□□ 0.28
CUX1-211ENST00000546411 TISP43B9A030 160 aa16.77■□□□□ 0.27
CUX1-211ENST00000546411 PIK3R2O00459 728 aa16.77■□□□□ 0.27
CUX1-211ENST00000546411 CFAP157Q5JU67 520 aa16.77■□□□□ 0.27
CUX1-211ENST00000546411 SYCP2LQ5T4T6 812 aa16.77■□□□□ 0.27
CUX1-211ENST00000546411 MMGT1Q8N4V1 131 aa16.77■□□□□ 0.27
CUX1-211ENST00000546411 MCUR1Q96AQ8 359 aa16.77■□□□□ 0.27
CUX1-211ENST00000546411 RILPQ96NA2 401 aa16.77■□□□□ 0.27
CUX1-211ENST00000546411 POLR3CQ9BUI4 534 aaPredicted RBP16.77■□□□□ 0.27
CUX1-211ENST00000546411 GGT7Q9UJ14 662 aa16.77■□□□□ 0.27
CUX1-211ENST00000546411 GBP1P32455 592 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 MAN1A1P33908 653 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 SMAD1Q15797 465 aaKnown RBP16.76■□□□□ 0.27
CUX1-211ENST00000546411 ECM1Q16610 540 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 GPD1LQ8N335 351 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 KCTD6Q8NC69 237 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 TPCN2Q8NHX9 752 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 P3H4Q92791 437 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 TLR10Q9BXR5 811 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.76■□□□□ 0.27
CUX1-211ENST00000546411 CA4P22748 312 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 IRAK1P51617 712 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 ZNF568Q3ZCX4 644 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 MIIPQ5JXC2 388 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 NME8Q8N427 588 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 ACAD9Q9H845 621 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 SPDYE2BA6NHP3 402 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 FGRP09769 529 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 SPDYE6P0CI01 402 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 PSMA2P25787 234 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 TFDP1Q14186 410 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 PPP6R3Q5H9R7 873 aaPredicted RBP16.76■□□□□ 0.27
CUX1-211ENST00000546411 LRRC8CQ8TDW0 803 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 FGFBP2Q9BYJ0 223 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 SLITRK6Q9H5Y7 841 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 FZD1Q9UP38 647 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 RGPD2P0DJD1 1756 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 KIF1AQ12756 1690 aa16.76■□□□□ 0.27
CUX1-211ENST00000546411 AFDNP55196 1824 aaKnown RBP16.75■□□□□ 0.27
CUX1-211ENST00000546411 CAPN9O14815 690 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 WDR46O15213 610 aaKnown RBP16.75■□□□□ 0.27
CUX1-211ENST00000546411 CAP2P40123 477 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 EIF3BP55884 814 aaKnown RBP16.75■□□□□ 0.27
CUX1-211ENST00000546411 ANGEL2Q5VTE6 544 aaKnown RBP16.75■□□□□ 0.27
CUX1-211ENST00000546411 SLFN12LQ6IEE8 588 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 WDR93Q6P2C0 686 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 AMIGO3Q86WK7 504 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 VPS52Q8N1B4 723 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 RNF149Q8NC42 400 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 CASKIN2Q8WXE0 1202 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 VIPAS39Q9H9C1 493 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 SUN1O94901 812 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 SAT1P21673 171 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 FAM198AQ9UFP1 575 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 ITGA4P13612 1032 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 DPY19L2Q6NUT2 758 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 CERKQ8TCT0 537 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 SLC20A1Q8WUM9 679 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 RIT2Q99578 217 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 RPF1Q9H9Y2 349 aaKnown RBP16.75■□□□□ 0.27
CUX1-211ENST00000546411 MYOZ2Q9NPC6 264 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 REXO2Q9Y3B8 237 aaKnown RBP16.75■□□□□ 0.27
CUX1-211ENST00000546411 PPP2R2AP63151 447 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 ZNF699Q32M78 642 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 ZNF667Q5HYK9 610 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 DACT2Q5SW24 774 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 TMEM35BQ8NCS4 154 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 TARS2Q9BW92 718 aaKnown RBP16.75■□□□□ 0.27
CUX1-211ENST00000546411 TOPORSQ9NS56 1045 aaPredicted RBP16.75■□□□□ 0.27
CUX1-211ENST00000546411 SIK3Q9Y2K2 1263 aa16.75■□□□□ 0.27
CUX1-211ENST00000546411 RTN2O75298 545 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 PPP1R37O75864 691 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 PHBP35232 272 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 TMEM119Q4V9L6 283 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 KIAA1755Q5JYT7 1200 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 C6orf118Q5T5N4 469 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 DARS2Q6PI48 645 aaKnown RBP16.74■□□□□ 0.27
CUX1-211ENST00000546411 ZNF720Q7Z2F6 126 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 APBB1IPQ7Z5R6 666 aaPredicted RBP16.74■□□□□ 0.27
CUX1-211ENST00000546411 PSPC1Q8WXF1 523 aaKnown RBP16.74■□□□□ 0.27
CUX1-211ENST00000546411 MED10Q9BTT4 135 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 TMEM117Q9H0C3 514 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 SLITRK3O94933 977 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 CHRNA3P32297 505 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 PRKCEQ02156 737 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 TKFCQ3LXA3 575 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 TBC1D1Q86TI0 1168 aaPredicted RBP16.74■□□□□ 0.27
CUX1-211ENST00000546411 TADA2BQ86TJ2 420 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 BBOF1Q8ND07 529 aa16.74■□□□□ 0.27
CUX1-211ENST00000546411 GMCL1Q96IK5 515 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms