RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 RNF168Q8IYW5 571 aaPredicted RBP17.42■□□□□ 0.38
CLSTN3-216ENST00000545663 TMEM175Q9BSA9 504 aa17.42■□□□□ 0.38
CLSTN3-216ENST00000545663 ARRDC1-AS1Q9H2J1 176 aa17.42■□□□□ 0.38
CLSTN3-216ENST00000545663 LMAN1LQ9HAT1 526 aa17.42■□□□□ 0.38
CLSTN3-216ENST00000545663 LY9Q9HBG7 655 aa17.42■□□□□ 0.38
CLSTN3-216ENST00000545663 SEC63Q9UGP8 760 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-216ENST00000545663 PIN4Q9Y237 131 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-216ENST00000545663 SSX2IPQ9Y2D8 614 aa17.42■□□□□ 0.38
CLSTN3-216ENST00000545663 FOXD2O60548 495 aaPredicted RBP17.41■□□□□ 0.38
CLSTN3-216ENST00000545663 ZNF623O75123 536 aa17.41■□□□□ 0.38
CLSTN3-216ENST00000545663 GAS6Q14393 721 aa17.41■□□□□ 0.38
CLSTN3-216ENST00000545663 ANKRD45Q5TZF3 282 aa17.41■□□□□ 0.38
CLSTN3-216ENST00000545663 POTEHQ6S545 545 aa17.41■□□□□ 0.38
CLSTN3-216ENST00000545663 MAMSTRQ6ZN01 415 aa17.41■□□□□ 0.38
CLSTN3-216ENST00000545663 SRBD1Q8N5C6 995 aaKnown RBP17.41■□□□□ 0.38
CLSTN3-216ENST00000545663 C12orf50Q8NA57 414 aaPredicted RBP17.41■□□□□ 0.38
CLSTN3-216ENST00000545663 URGCPQ8TCY9 931 aa17.41■□□□□ 0.38
CLSTN3-216ENST00000545663 RSPH1Q8WYR4 309 aa17.41■□□□□ 0.38
CLSTN3-216ENST00000545663 FAM193BQ96PV7 902 aaPredicted RBP17.41■□□□□ 0.38
CLSTN3-216ENST00000545663 SMOC1Q9H4F8 434 aa17.41■□□□□ 0.38
CLSTN3-216ENST00000545663 MRPS17Q9Y2R5 130 aaKnown RBP17.41■□□□□ 0.38
CLSTN3-216ENST00000545663 F5P12259 2224 aa17.4■□□□□ 0.38
CLSTN3-216ENST00000545663 OR1G1P47890 313 aa17.4■□□□□ 0.38
CLSTN3-216ENST00000545663 SOWAHCQ53LP3 525 aaPredicted RBP17.4■□□□□ 0.38
CLSTN3-216ENST00000545663 CATIPQ7Z7H3 387 aa17.4■□□□□ 0.38
CLSTN3-216ENST00000545663 TICAM2Q86XR7 235 aa17.4■□□□□ 0.38
CLSTN3-216ENST00000545663 ING5Q8WYH8 240 aa17.4■□□□□ 0.38
CLSTN3-216ENST00000545663 GATA6Q92908 595 aa17.4■□□□□ 0.38
CLSTN3-216ENST00000545663 ADAM33Q9BZ11 813 aa17.4■□□□□ 0.38
CLSTN3-216ENST00000545663 CHST7Q9NS84 486 aa17.4■□□□□ 0.38
CLSTN3-216ENST00000545663 GABBR1Q9UBS5 961 aa17.4■□□□□ 0.38
CLSTN3-216ENST00000545663 PCDHB2Q9Y5E7 798 aa17.4■□□□□ 0.38
CLSTN3-216ENST00000545663 A0A087WZ62 844 aa17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 CCL16O15467 120 aa17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 SKIP12755 728 aa17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 CXCL12P48061 93 aa17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 CCR3P51677 355 aa17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 PPP2R5DQ14738 602 aa17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 NPAS3Q8IXF0 933 aa17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 ZCCHC14Q8WYQ9 949 aaKnown RBP17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 FDXACB1Q9BRP7 624 aaPredicted RBP17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 DSCC1Q9BVC3 393 aa17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 GCOM2Q9BZD3 368 aaPredicted RBP17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 HCFC1R1Q9NWW0 138 aa17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 POLIQ9UNA4 740 aa17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 CEP131Q9UPN4 1083 aa17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 MTCL1Q9Y4B5 1905 aaKnown RBP17.39■□□□□ 0.37
CLSTN3-216ENST00000545663 ZNF806P0C7X5 589 aa17.38■□□□□ 0.37
CLSTN3-216ENST00000545663 CEP68Q76N32 757 aa17.38■□□□□ 0.37
CLSTN3-216ENST00000545663 COLGALT2Q8IYK4 626 aa17.38■□□□□ 0.37
CLSTN3-216ENST00000545663 GPR62Q9BZJ7 368 aa17.38■□□□□ 0.37
CLSTN3-216ENST00000545663 C2orf42Q9NWW7 574 aa17.38■□□□□ 0.37
CLSTN3-216ENST00000545663 TAF6LQ9Y6J9 622 aa17.38■□□□□ 0.37
CLSTN3-216ENST00000545663 ERICH2A1L162 156 aa17.37■□□□□ 0.37
CLSTN3-216ENST00000545663 TMEM8BA6NDV4 472 aa17.37■□□□□ 0.37
CLSTN3-216ENST00000545663 FAM86B1E9PN63 330 aa17.37■□□□□ 0.37
CLSTN3-216ENST00000545663 ZNF862O60290 1169 aa17.37■□□□□ 0.37
CLSTN3-216ENST00000545663 FAM86B2P0C5J1 330 aa17.37■□□□□ 0.37
CLSTN3-216ENST00000545663 NOVA1P51513 510 aaKnown RBP17.37■□□□□ 0.37
CLSTN3-216ENST00000545663 TANGO2Q6ICL3 276 aa17.37■□□□□ 0.37
CLSTN3-216ENST00000545663 ZNF710Q8N1W2 664 aa17.37■□□□□ 0.37
CLSTN3-216ENST00000545663 PGBD4Q96DM1 585 aa17.37■□□□□ 0.37
CLSTN3-216ENST00000545663 MCRS1Q96EZ8 462 aa17.37■□□□□ 0.37
CLSTN3-216ENST00000545663 RSAD1Q9HA92 442 aa17.37■□□□□ 0.37
CLSTN3-216ENST00000545663 K7ESF4 209 aa17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 NRG2O14511 850 aaPredicted RBP17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 C1RP00736 705 aa17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 SFPQP23246 707 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 RAB27AP51159 221 aa17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 ZNF252P-AS1Q0IIN9 211 aa17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 GRM2Q14416 872 aa17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 PRSS55Q6UWB4 352 aaPredicted RBP17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 MRPL10Q7Z7H8 261 aaKnown RBP17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 LONP2Q86WA8 852 aa17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 KSR1Q8IVT5 923 aa17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 CCDC82Q8N4S0 544 aa17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 RABGGTAQ92696 567 aa17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 MBOAT7Q96N66 472 aa17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 SCNM1Q9BWG6 230 aa17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 KANSL3Q9P2N6 904 aa17.36■□□□□ 0.37
CLSTN3-216ENST00000545663 IPO5O00410 1097 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 ECI2O75521 394 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 PSAPP07602 524 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 SMARCA1P28370 1054 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 CNR2P34972 360 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 ZNF76P36508 570 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 RBM25P49756 843 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 TCEAL6Q6IPX3 200 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 CATSPER4Q7RTX7 472 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 HEATR3Q7Z4Q2 680 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 PLA2G4DQ86XP0 818 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 CTCFLQ8NI51 663 aaPredicted RBP17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 IGDCC4Q8TDY8 1250 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 TCEAL3Q969E4 200 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 IL25Q9H293 177 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 MIOSQ9NXC5 875 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 FNIP2Q9P278 1114 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 FBXW11Q9UKB1 542 aa17.35■□□□□ 0.37
CLSTN3-216ENST00000545663 CYSRT1A8MQ03 144 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 MAN2B1O00754 1011 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms