RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 GPS2Q13227 327 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 TAS1R3Q7RTX0 852 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 DNERQ8NFT8 737 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 CTNNBL1Q8WYA6 563 aaPredicted RBP17.66■□□□□ 0.42
COL4A1-204ENST00000543140 ARHGEF26Q96DR7 871 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 KRT12Q99456 494 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 FAM213AQ9BRX8 229 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 ADARB2Q9NS39 739 aaKnown RBP17.66■□□□□ 0.42
COL4A1-204ENST00000543140 STIM2Q9P246 746 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 OTOFQ9HC10 1997 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 A0A0U1RQG5 324 aaPredicted RBP17.66■□□□□ 0.42
COL4A1-204ENST00000543140 PHACTR2O75167 634 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 EMC2Q15006 297 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 TAF3Q5VWG9 929 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 HVCN1Q96D96 273 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 KREMEN1Q96MU8 473 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 SYNGAP1Q96PV0 1343 aa17.66■□□□□ 0.42
COL4A1-204ENST00000543140 A0A0A6YYK5 440 aaPredicted RBP17.65■□□□□ 0.42
COL4A1-204ENST00000543140 ZSCAN5CA6NGD5 496 aaPredicted RBP17.65■□□□□ 0.42
COL4A1-204ENST00000543140 KRT39Q6A163 491 aa17.65■□□□□ 0.42
COL4A1-204ENST00000543140 LMBR1Q8WVP7 490 aa17.65■□□□□ 0.42
COL4A1-204ENST00000543140 SPATC1LQ9H0A9 340 aa17.65■□□□□ 0.42
COL4A1-204ENST00000543140 BUB1BO60566 1050 aaPredicted RBP17.65■□□□□ 0.42
COL4A1-204ENST00000543140 SGPL1O95470 568 aa17.65■□□□□ 0.42
COL4A1-204ENST00000543140 GLI1P08151 1106 aa17.65■□□□□ 0.42
COL4A1-204ENST00000543140 TMEM253P0C7T8 217 aa17.65■□□□□ 0.42
COL4A1-204ENST00000543140 IRX3P78415 501 aaPredicted RBP17.65■□□□□ 0.42
COL4A1-204ENST00000543140 FMNL3Q8IVF7 1028 aa17.65■□□□□ 0.42
COL4A1-204ENST00000543140 RPUSD2Q8IZ73 545 aaKnown RBP17.65■□□□□ 0.42
COL4A1-204ENST00000543140 METTL13Q8N6R0 699 aa17.65■□□□□ 0.42
COL4A1-204ENST00000543140 USP38Q8NB14 1042 aa17.65■□□□□ 0.42
COL4A1-204ENST00000543140 TAS1R2Q8TE23 839 aa17.65■□□□□ 0.42
COL4A1-204ENST00000543140 FHDC1Q9C0D6 1143 aaPredicted RBP17.65■□□□□ 0.42
COL4A1-204ENST00000543140 ESYT3A0FGR9 886 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 SOWAHBA6NEL2 793 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 CYP26A1O43174 497 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 UBA1P22314 1058 aaKnown RBP17.64■□□□□ 0.41
COL4A1-204ENST00000543140 CYP24A1Q07973 514 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 KCTD19Q17RG1 926 aaPredicted RBP17.64■□□□□ 0.41
COL4A1-204ENST00000543140 SLFN11Q7Z7L1 901 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 NT5DC3Q86UY8 548 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 RIOX2Q8IUF8 465 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 KLHL7Q8IXQ5 586 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 RFFLQ8WZ73 363 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 CHORDC1Q9UHD1 332 aaPredicted RBP17.64■□□□□ 0.41
COL4A1-204ENST00000543140 HPCAL4Q9UM19 191 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 MAFBQ9Y5Q3 323 aaPredicted RBP17.64■□□□□ 0.41
COL4A1-204ENST00000543140 LOC285556D6RIA3 1793 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 OATP04181 439 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 TTLL12Q14166 644 aaPredicted RBP17.64■□□□□ 0.41
COL4A1-204ENST00000543140 BRDTQ58F21 947 aaPredicted RBP17.64■□□□□ 0.41
COL4A1-204ENST00000543140 SLC47A2Q86VL8 602 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 GPD1LQ8N335 351 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 AENQ8WTP8 325 aaKnown RBP17.64■□□□□ 0.41
COL4A1-204ENST00000543140 MFSD14AQ96MC6 490 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 FBXL18Q96ME1 805 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 PI4K2AQ9BTU6 479 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 AP1M1Q9BXS5 423 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 TMEM8AQ9HCN3 771 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 VPS18Q9P253 973 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 ARHGAP28Q9P2N2 729 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 DAAM1Q9Y4D1 1078 aa17.64■□□□□ 0.41
COL4A1-204ENST00000543140 FTLP02792 175 aaPredicted RBP17.63■□□□□ 0.41
COL4A1-204ENST00000543140 ICAM3P32942 547 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 LMBRD2Q68DH5 695 aaPredicted RBP17.63■□□□□ 0.41
COL4A1-204ENST00000543140 SND1Q7KZF4 910 aaKnown RBP eCLIP17.63■□□□□ 0.41
COL4A1-204ENST00000543140 SV2AQ7L0J3 742 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 ASAP3Q8TDY4 903 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 COG5Q9UP83 839 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 STXBP5LQ9Y2K9 1186 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 NCANO14594 1321 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 ATP8B3O60423 1300 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 LRRIQ4A6NIV6 560 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 PGK2P07205 417 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 IREB2P48200 963 aaKnown RBP17.63■□□□□ 0.41
COL4A1-204ENST00000543140 LIG4P49917 911 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 RTP1P59025 263 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 NOP9Q86U38 636 aaKnown RBP17.63■□□□□ 0.41
COL4A1-204ENST00000543140 SYCE1Q8N0S2 351 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 PROCA1Q8NCQ7 364 aaPredicted RBP17.63■□□□□ 0.41
COL4A1-204ENST00000543140 FBXL13Q8NEE6 735 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 ASCC2Q9H1I8 757 aaPredicted RBP17.63■□□□□ 0.41
COL4A1-204ENST00000543140 FBXO40Q9UH90 709 aa17.63■□□□□ 0.41
COL4A1-204ENST00000543140 ANKRD62A6NC57 917 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 HEXIM1O94992 359 aaKnown RBP17.62■□□□□ 0.41
COL4A1-204ENST00000543140 ATG7O95352 703 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 MFAP3P55082 362 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 FAM193AP78312 1265 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 GUCY2DQ02846 1103 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 PRPF4BQ13523 1007 aaKnown RBP17.62■□□□□ 0.41
COL4A1-204ENST00000543140 HSP90B2PQ58FF3 399 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 FAM71AQ8IYT1 594 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 DHX38Q92620 1227 aaKnown RBP17.62■□□□□ 0.41
COL4A1-204ENST00000543140 TATDN2Q93075 761 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 PBKQ96KB5 322 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 PCDHB18PQ96TA0 734 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 EPB41L5Q9HCM4 733 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 RAB20Q9NX57 234 aa17.62■□□□□ 0.41
COL4A1-204ENST00000543140 SUCLA2Q9P2R7 463 aaPredicted RBP17.62■□□□□ 0.41
COL4A1-204ENST00000543140 AMFRQ9UKV5 643 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms