RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 SLCO6A1Q86UG4 719 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 C11orf74Q86VG3 221 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 ZNF280BQ86YH2 543 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 NPAS3Q8IXF0 933 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 YAF2Q8IY57 180 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 NME8Q8N427 588 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 MINDY1Q8N5J2 469 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 CAMKK1Q8N5S9 505 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 RGS22Q8NE09 1264 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 NEDD1Q8NHV4 660 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 TTC8Q8TAM2 541 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 BCL7CQ8WUZ0 217 aaPredicted RBP3.78□□□□□ -1.8
CHD4-209ENST00000542717 DCAF4Q8WV16 495 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 GPKOWQ92917 476 aaPredicted RBP eCLIP3.78□□□□□ -1.85e-13■□□□□ 9.6
CHD4-209ENST00000542717 TNPO1Q92973 898 aaKnown RBP3.78□□□□□ -1.8
CHD4-209ENST00000542717 ELSPBP1Q96BH3 223 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 NXPE2Q96DL1 559 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 MSANTD3Q96H12 275 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 HHIPQ96QV1 700 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 VN1R3Q9BXE9 311 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 ZNF768Q9H5H4 540 aaKnown RBP3.78□□□□□ -1.8
CHD4-209ENST00000542717 NRDE2Q9H7Z3 1164 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 ZFP14Q9HCL3 533 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 FSCN3Q9NQT6 498 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 TLR7Q9NYK1 1049 aaKnown RBP3.78□□□□□ -1.8
CHD4-209ENST00000542717 ERAP1Q9NZ08 941 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 DBNLQ9UJU6 430 aaKnown RBP3.78□□□□□ -1.8
CHD4-209ENST00000542717 MAN2B2Q9Y2E5 1009 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 FAN1Q9Y2M0 1017 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 DOCK6Q96HP0 2047 aa3.78□□□□□ -1.8
CHD4-209ENST00000542717 ABCA7Q8IZY2 2146 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 POLQO75417 2590 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 WDR19Q8NEZ3 1342 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 ATXN2Q99700 1313 aaKnown RBP3.77□□□□□ -1.81
CHD4-209ENST00000542717 KDM3AQ9Y4C1 1321 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 THADAQ6YHU6 1953 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 TSPY2A6NKD2 308 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 PLK4O00444 970 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 GOLIM4O00461 696 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 TERTO14746 1132 aaKnown RBP3.77□□□□□ -1.81
CHD4-209ENST00000542717 TLX3O43711 291 aaPredicted RBP3.77□□□□□ -1.81
CHD4-209ENST00000542717 DHX16O60231 1041 aaKnown RBP3.77□□□□□ -1.81
CHD4-209ENST00000542717 ZNF862O60290 1169 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 AFPP02771 609 aaKnown RBP3.77□□□□□ -1.81
CHD4-209ENST00000542717 SOD2P04179 222 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 APPP05067 770 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 ALDH2P05091 517 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 SKIP12755 728 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 PSMC3P17980 439 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 CCND2P30279 289 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 TCF7P36402 384 aaPredicted RBP3.77□□□□□ -1.81
CHD4-209ENST00000542717 SOX9P48436 509 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 TDO2P48775 406 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 NFKB2Q00653 900 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 KCNH2Q12809 1159 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 PLCB4Q15147 1175 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 PON2Q15165 354 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 UVSSAQ2YD98 709 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 SLFNL1Q499Z3 407 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 BROXQ5VW32 411 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 GLB1LQ6UWU2 654 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 BTNL9Q6UXG8 535 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 FAM228AQ86W67 206 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 SYT12Q8IV01 421 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 NAXDQ8IW45 347 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 SYNPOQ8N3V7 929 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 MRPL50Q8N5N7 158 aaKnown RBP3.77□□□□□ -1.81
CHD4-209ENST00000542717 OR2I1PQ8NGU4 316 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 SETD7Q8WTS6 366 aaKnown RBP3.77□□□□□ -1.81
CHD4-209ENST00000542717 TRAPPC12Q8WVT3 735 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 TMEM40Q8WWA1 233 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 GAD1Q99259 594 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 LGMNQ99538 433 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 OSMRQ99650 979 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 MEIS3Q99687 375 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 PDCD2LQ9BRP1 358 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.77□□□□□ -1.811e-7■■□□□ 13.2
CHD4-209ENST00000542717 BCL11AQ9H165 835 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 CSRNP2Q9H175 543 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 SMARCAD1Q9H4L7 1026 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 C8orf33Q9H7E9 229 aaPredicted RBP3.77□□□□□ -1.81
CHD4-209ENST00000542717 PRDM16Q9HAZ2 1276 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 TBC1D13Q9NVG8 400 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 GDE1Q9NZC3 331 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 DNAJB4Q9UDY4 337 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 KCNH3Q9ULD8 1083 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 PRG3Q9Y2Y8 225 aaPredicted RBP3.77□□□□□ -1.81
CHD4-209ENST00000542717 MRPL11Q9Y3B7 192 aaKnown RBP3.77□□□□□ -1.81
CHD4-209ENST00000542717 PCDHB15Q9Y5E8 787 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 PCDHA2Q9Y5H9 948 aa3.77□□□□□ -1.81
CHD4-209ENST00000542717 GREB1LQ9C091 1923 aaPredicted RBP3.77□□□□□ -1.81
CHD4-209ENST00000542717 PCNX1Q96RV3 2341 aa3.76□□□□□ -1.81
CHD4-209ENST00000542717 SMIM35A0A1B0GVV1 85 aa3.76□□□□□ -1.81
CHD4-209ENST00000542717 TCRBV5S4A2TA0A5A2 114 aa3.76□□□□□ -1.81
CHD4-209ENST00000542717 B4E1Z4 1266 aa3.76□□□□□ -1.81
CHD4-209ENST00000542717 E9PAM4 449 aa3.76□□□□□ -1.81
CHD4-209ENST00000542717 SPECC1L-ADORA2AF8WAN1 911 aa3.76□□□□□ -1.81
CHD4-209ENST00000542717 SURF6O75683 361 aaKnown RBP3.76□□□□□ -1.81
CHD4-209ENST00000542717 APBB3O95704 486 aa3.76□□□□□ -1.81
CHD4-209ENST00000542717 C8AP07357 584 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms