RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 VPS52Q8N1B4 723 aa17.24■□□□□ 0.35
VARS2-212ENST00000542001 POLRMTO00411 1230 aaKnown RBP17.23■□□□□ 0.35
VARS2-212ENST00000542001 ORC1Q13415 861 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 MIS18BP1Q6P0N0 1132 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 SMC6Q96SB8 1091 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 HERC5Q9UII4 1024 aaKnown RBP17.23■□□□□ 0.35
VARS2-212ENST00000542001 XRN1Q8IZH2 1706 aaKnown RBP17.23■□□□□ 0.35
VARS2-212ENST00000542001 MRC1P22897 1456 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 MAP3K6O95382 1288 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 PBX1P40424 430 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 ATP11AP98196 1134 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 SLC29A2Q14542 456 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 CLUL1Q15846 466 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 KYNUQ16719 465 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 OR6B2Q6IFH4 312 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 MICAL1Q8TDZ2 1067 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 GRK7Q8WTQ7 553 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 GINM1Q9NU53 330 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 DCCP43146 1447 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 EIF3HO15372 352 aaKnown RBP eCLIP17.23■□□□□ 0.351e-7■□□□□ 11
VARS2-212ENST00000542001 MAP2K2P36507 400 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 BPIFB4P59827 614 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 DEFB132Q7Z7B7 95 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 PCDHA10Q9Y5I2 948 aa17.23■□□□□ 0.35
VARS2-212ENST00000542001 CSDE1O75534 798 aaKnown RBP17.22■□□□□ 0.35
VARS2-212ENST00000542001 BRAFP15056 766 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 KIAA1755Q5JYT7 1200 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 FYB2Q5VWT5 728 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 LRRC55Q6ZSA7 311 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 RHPN2Q8IUC4 686 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 CDAN1Q8IWY9 1227 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 LRRC8CQ8TDW0 803 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 DNAJC19Q96DA6 116 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 RUNDC3BQ96NL0 473 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 RBAKQ9NYW8 714 aaPredicted RBP17.22■□□□□ 0.35
VARS2-212ENST00000542001 SALL4Q9UJQ4 1053 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 HEY1Q9Y5J3 304 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 COMMD10Q9Y6G5 202 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 NR3C2P08235 984 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 CNGA1P29973 690 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 TM4SF1P30408 202 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 KRT17Q04695 432 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 FBXO25Q8TCJ0 367 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 MAIP1Q8WWC4 291 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 TARS2Q9BW92 718 aaKnown RBP17.22■□□□□ 0.35
VARS2-212ENST00000542001 TBC1D22BQ9NU19 505 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 INTUQ9ULD6 942 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 SYNGAP1Q96PV0 1343 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 H0Y3Z8 333 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 GNA15P30679 374 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 MDH1P40925 334 aaKnown RBP17.22■□□□□ 0.35
VARS2-212ENST00000542001 HADHQ16836 314 aaKnown RBP17.22■□□□□ 0.35
VARS2-212ENST00000542001 ERICH1Q86X53 443 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 JAMLQ86YT9 394 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 FERMT1Q9BQL6 677 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 RAB21Q9UL25 225 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 PPP1R9AQ9ULJ8 1098 aa17.22■□□□□ 0.35
VARS2-212ENST00000542001 MED1Q15648 1581 aaPredicted RBP17.22■□□□□ 0.35
VARS2-212ENST00000542001 RASA4BC9J798 803 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 RASA4O43374 803 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 SUN1O94901 812 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 NT5C2P49902 561 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 ANKMY2Q8IV38 441 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 AKT1S1Q96B36 256 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 HEXIM2Q96MH2 286 aaKnown RBP17.21■□□□□ 0.35
VARS2-212ENST00000542001 DCTN4Q9UJW0 460 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 FMN2Q9NZ56 1722 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 RCN2Q14257 317 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 KCTD2Q14681 263 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 CBWD6Q4V339 395 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 DALRD3Q5D0E6 543 aaKnown RBP17.21■□□□□ 0.35
VARS2-212ENST00000542001 CBWD3Q5JTY5 395 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 CBWD5Q5RIA9 395 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 SPOPLQ6IQ16 392 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 MMS22LQ6ZRQ5 1243 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 NSUN6Q8TEA1 469 aaKnown RBP17.21■□□□□ 0.35
VARS2-212ENST00000542001 KLF6Q99612 283 aaPredicted RBP17.21■□□□□ 0.35
VARS2-212ENST00000542001 MXRA8Q9BRK3 442 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 TUFT1Q9NNX1 390 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 TAS2R14Q9NYV8 317 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 SEL1LQ9UBV2 794 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 AGO2Q9UKV8 859 aaKnown RBP17.21■□□□□ 0.35
VARS2-212ENST00000542001 SUGT1Q9Y2Z0 365 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 ITIH3Q06033 890 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 C6orf163Q5TEZ5 329 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 APTXQ7Z2E3 356 aaKnown RBP17.21■□□□□ 0.35
VARS2-212ENST00000542001 RTKN2Q8IZC4 609 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 NME8Q8N427 588 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 LRRC71Q8N4P6 559 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 SLC35C1Q96A29 364 aa17.21■□□□□ 0.35
VARS2-212ENST00000542001 WEE2P0C1S8 567 aa17.21■□□□□ 0.34
VARS2-212ENST00000542001 PSMA2P25787 234 aa17.21■□□□□ 0.34
VARS2-212ENST00000542001 GPS1Q13098 491 aa17.21■□□□□ 0.34
VARS2-212ENST00000542001 MEA1Q16626 185 aa17.21■□□□□ 0.34
VARS2-212ENST00000542001 KCTD6Q8NC69 237 aa17.21■□□□□ 0.34
VARS2-212ENST00000542001 ZDHHC15Q96MV8 337 aa17.21■□□□□ 0.34
VARS2-212ENST00000542001 VIPAS39Q9H9C1 493 aa17.21■□□□□ 0.34
VARS2-212ENST00000542001 ATP6V0A4Q9HBG4 840 aa17.21■□□□□ 0.34
VARS2-212ENST00000542001 G3BP2Q9UN86 482 aaKnown RBP17.21■□□□□ 0.34
VARS2-212ENST00000542001 PITPNM2Q9BZ72 1349 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms