RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 FAM26DQ5JW98 314 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 VARS2Q5ST30 1063 aaKnown RBP10.25□□□□□ -0.77
DDX55-208ENST00000541259 ANKRD40Q6AI12 368 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 CENPPQ6IPU0 288 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 SLC39A4Q6P5W5 647 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 STXBP4Q6ZWJ1 553 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 SRGAP1Q7Z6B7 1085 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 MAP4K3Q8IVH8 894 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 SLC17A8Q8NDX2 589 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 KCNN1Q92952 543 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 P2RX5Q93086 422 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 MARVELD3Q96A59 401 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 HVCN1Q96D96 273 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 DHTKD1Q96HY7 919 aaPredicted RBP10.25□□□□□ -0.77
DDX55-208ENST00000541259 ZBTB45Q96K62 511 aaPredicted RBP10.25□□□□□ -0.77
DDX55-208ENST00000541259 DUSP9Q99956 384 aaKnown RBP10.25□□□□□ -0.77
DDX55-208ENST00000541259 NOC4LQ9BVI4 516 aaKnown RBP10.25□□□□□ -0.77
DDX55-208ENST00000541259 GCOM2Q9BZD3 368 aaPredicted RBP10.25□□□□□ -0.77
DDX55-208ENST00000541259 GTPBP4Q9BZE4 634 aaKnown RBP10.25□□□□□ -0.77
DDX55-208ENST00000541259 C2orf40Q9H1Z8 148 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 CBX8Q9HC52 389 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 NOC2LQ9Y3T9 749 aaKnown RBP10.25□□□□□ -0.77
DDX55-208ENST00000541259 UBE4BO95155 1302 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 PHLPP2Q6ZVD8 1323 aa10.25□□□□□ -0.77
DDX55-208ENST00000541259 H0YCG3 227 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 ACKR2O00590 384 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 PSMA7O14818 248 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 CLIC2O15247 247 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 TSPAN1O60635 241 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 SELPP16109 830 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 EIF4BP23588 611 aaKnown RBP10.24□□□□□ -0.77
DDX55-208ENST00000541259 CCNE1P24864 410 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 CYP2C18P33260 490 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 RBL2Q08999 1139 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 STRN3Q13033 797 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 PAK1Q13153 545 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 ALCAMQ13740 583 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 LPIN1Q14693 890 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 GPNMBQ14956 572 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 IQCB1Q15051 598 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 MAPK6Q16659 721 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 FAM187BQ17R55 369 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 FBXO47Q5MNV8 452 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 FAM228AQ86W67 206 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 CDR2LQ86X02 465 aaPredicted RBP10.24□□□□□ -0.77
DDX55-208ENST00000541259 DHX40Q8IX18 779 aaKnown RBP10.24□□□□□ -0.77
DDX55-208ENST00000541259 SYCP3Q8IZU3 236 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 AOPEPQ8N6M6 819 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 ZSWIM2Q8NEG5 633 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 CAGE1Q8TC20 777 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 CPB2Q96IY4 423 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 ACO2Q99798 780 aaKnown RBP10.24□□□□□ -0.77
DDX55-208ENST00000541259 TARS2Q9BW92 718 aaKnown RBP10.24□□□□□ -0.77
DDX55-208ENST00000541259 PPP1R12CQ9BZL4 782 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 HAPLN2Q9GZV7 340 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 AGO3Q9H9G7 860 aaKnown RBP10.24□□□□□ -0.77
DDX55-208ENST00000541259 TMEM39AQ9NV64 488 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 DACH1Q9UI36 760 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 RWDD2AQ9UIY3 292 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 TBX21Q9UL17 535 aa10.24□□□□□ -0.77
DDX55-208ENST00000541259 TRIM43BA6NCK2 446 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 PDXKO00764 312 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 CAND2O75155 1236 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 RPS6KA5O75582 802 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 KIF20AO95235 890 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 PIGRP01833 764 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 RPLP2P05387 115 aaKnown RBP10.23□□□□□ -0.77
DDX55-208ENST00000541259 CLTBP09497 229 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 GHRP10912 638 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 ARF4P18085 180 aaPredicted RBP10.23□□□□□ -0.77
DDX55-208ENST00000541259 ITGB8P26012 769 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 ERCC5P28715 1186 aaPredicted RBP10.23□□□□□ -0.77
DDX55-208ENST00000541259 ADSSP30520 456 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 HOXA11P31270 313 aaPredicted RBP10.23□□□□□ -0.77
DDX55-208ENST00000541259 CD52P31358 61 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 PPP1R2P41236 205 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 ZNF165P49910 485 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 CCL23P55773 120 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 BFSP2Q13515 415 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 PRPF4BQ13523 1007 aaKnown RBP10.23□□□□□ -0.77
DDX55-208ENST00000541259 NCAPHQ15003 741 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 ZCWPW2Q504Y3 356 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 EEF1DP3Q658K8 133 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 TTI2Q6NXR4 508 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 LRRC8DQ7L1W4 858 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 CATSPER4Q7RTX7 472 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 TNS4Q8IZW8 715 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 CCDC155Q8N6L0 562 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 RNF214Q8ND24 703 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 TRIM43Q96BQ3 446 aaPredicted RBP10.23□□□□□ -0.77
DDX55-208ENST00000541259 BICD1Q96G01 975 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 EEF2KMTQ96G04 330 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 SCLYQ96I15 445 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 ANP32EQ9BTT0 268 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 GBP3Q9H0R5 595 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 WNT8AQ9H1J5 351 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 RBSNQ9H1K0 784 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 HIPK3Q9H422 1215 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 PCIF1Q9H4Z3 704 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 TMEM206Q9H813 350 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms