RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 EPC1Q9H2F5 836 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 SARS2Q9NP81 518 aaKnown RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 EHD2Q9NZN4 543 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 ABCA8O94911 1581 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 CYP2D7A0A087X1C5 515 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 TRIM49BA6NDI0 452 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 DDHD2O94830 711 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 MYO1DO94832 1006 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 OCM2P0CE71 109 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 OCMP0CE72 109 aaPredicted RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 KCNA3P22001 575 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 TBXAS1P24557 533 aaPredicted RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 SNAP25P60880 206 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 CCDC85BQ15834 202 aaPredicted RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 LRRC8EQ6NSJ5 796 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 MCPH1Q8NEM0 835 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 RNF25Q96BH1 459 aaPredicted RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 ATP6V1G3Q96LB4 118 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 ASCC2Q9H1I8 757 aaPredicted RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 CYP4F11Q9HBI6 524 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 PCDHA6Q9UN73 950 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 PCDHA8Q9Y5H6 950 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 IL10P22301 178 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 HNRNPH1P31943 449 aaKnown RBP10.53□□□□□ -0.72
COL4A6-208ENST00000538570 GCLMP48507 274 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 ATP11CQ8NB49 1132 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 TEKT4Q8WW24 435 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 PLEKHF1Q96S99 279 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 PIK3R2O00459 728 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 LSM1O15116 133 aaKnown RBP10.53□□□□□ -0.72
COL4A6-208ENST00000538570 GGPS1O95749 300 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 SERPINB3P29508 390 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 KCNH2Q12809 1159 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 ITPRIPL1Q6GPH6 555 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 C1orf228Q6PIY5 440 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 FAM43BQ6ZT52 329 aaPredicted RBP10.53□□□□□ -0.72
COL4A6-208ENST00000538570 C17orf50Q8WW18 174 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 FAM167AQ96KS9 214 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 ACAP3Q96P50 834 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 EGFL8Q99944 293 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 TOPORSQ9NS56 1045 aaPredicted RBP10.53□□□□□ -0.72
COL4A6-208ENST00000538570 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.53□□□□□ -0.72
COL4A6-208ENST00000538570 C6orf203Q9P0P8 240 aaPredicted RBP10.53□□□□□ -0.72
COL4A6-208ENST00000538570 METP08581 1390 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 GNL1P36915 607 aaPredicted RBP10.53□□□□□ -0.72
COL4A6-208ENST00000538570 MKRN3Q13064 507 aaKnown RBP10.53□□□□□ -0.72
COL4A6-208ENST00000538570 CDKL3Q8IVW4 592 aaPredicted RBP10.53□□□□□ -0.72
COL4A6-208ENST00000538570 ZBED8Q8IZ13 594 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 STX19Q8N4C7 294 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 GIMAP8Q8ND71 665 aaPredicted RBP10.53□□□□□ -0.72
COL4A6-208ENST00000538570 C11orf70Q9BRQ4 267 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 BRIP1Q9BX63 1249 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 SLC13A1Q9BZW2 595 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 EML4Q9HC35 981 aaKnown RBP10.53□□□□□ -0.72
COL4A6-208ENST00000538570 SYNDIG1LA6NDD5 238 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 PDE5AO76074 875 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 SASH1O94885 1247 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 SDC4P31431 198 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 NECTIN1Q15223 517 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 MAPK6Q16659 721 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 SLC10A5Q5PT55 438 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 PI16Q6UXB8 463 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 C10orf88Q9H8K7 445 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 EFCAB6Q5THR3 1501 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 ADCY3O60266 1144 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 HUS1O60921 280 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 PRCPP42785 496 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 SERPINB10P48595 397 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 AP1B1Q10567 949 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 COASYQ13057 564 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 ZNF211Q13398 564 aaPredicted RBP10.53□□□□□ -0.72
COL4A6-208ENST00000538570 MTMR1Q13613 665 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 FAM49AQ9H0Q0 323 aaPredicted RBP10.53□□□□□ -0.72
COL4A6-208ENST00000538570 TMEM165Q9HC07 324 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 SEL1LQ9UBV2 794 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 SESN1Q9Y6P5 492 aa10.53□□□□□ -0.72
COL4A6-208ENST00000538570 M0QYV0 167 aa10.52□□□□□ -0.72
COL4A6-208ENST00000538570 ZSCAN9O15535 394 aaPredicted RBP10.52□□□□□ -0.72
COL4A6-208ENST00000538570 TBL3Q12788 808 aaKnown RBP10.52□□□□□ -0.72
COL4A6-208ENST00000538570 BEST2Q8NFU1 509 aa10.52□□□□□ -0.72
COL4A6-208ENST00000538570 CASS4Q9NQ75 786 aa10.52□□□□□ -0.72
COL4A6-208ENST00000538570 PIH1D3Q9NQM4 214 aaKnown RBP10.52□□□□□ -0.72
COL4A6-208ENST00000538570 STAP1Q9ULZ2 295 aa10.52□□□□□ -0.72
COL4A6-208ENST00000538570 STK36Q9NRP7 1315 aa10.52□□□□□ -0.72
COL4A6-208ENST00000538570 PCP4L1A6NKN8 68 aa10.52□□□□□ -0.72
COL4A6-208ENST00000538570 MLH1P40692 756 aa10.52□□□□□ -0.72
COL4A6-208ENST00000538570 DGKHQ86XP1 1220 aa10.52□□□□□ -0.72
COL4A6-208ENST00000538570 DDIASQ8IXT1 998 aa10.52□□□□□ -0.72
COL4A6-208ENST00000538570 SLITRK6Q9H5Y7 841 aa10.52□□□□□ -0.72
COL4A6-208ENST00000538570 MYO5CQ9NQX4 1742 aa10.52□□□□□ -0.73
COL4A6-208ENST00000538570 PVALEFA0A1B0GWK0 134 aa10.52□□□□□ -0.73
COL4A6-208ENST00000538570 CFAP69A5D8W1 941 aa10.52□□□□□ -0.73
COL4A6-208ENST00000538570 NCK2O43639 380 aa10.52□□□□□ -0.73
COL4A6-208ENST00000538570 MYL3P08590 195 aa10.52□□□□□ -0.73
COL4A6-208ENST00000538570 PHKA2P46019 1235 aa10.52□□□□□ -0.73
COL4A6-208ENST00000538570 VAMP7P51809 220 aa10.52□□□□□ -0.73
COL4A6-208ENST00000538570 MED21Q13503 144 aa10.52□□□□□ -0.73
COL4A6-208ENST00000538570 ZNF568Q3ZCX4 644 aa10.52□□□□□ -0.73
COL4A6-208ENST00000538570 TTC23LQ6PF05 361 aa10.52□□□□□ -0.73
COL4A6-208ENST00000538570 TMC5Q6UXY8 1006 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms