RNA–Protein interactions for RNA: ENST00000537529.6

MKS1-204, Transcript of Meckel syndrome, type 1, humanhuman

TSL 1 (best) BASIC

Gene MKS1, Length 2,083 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-204ENST00000537529 GADL1Q6ZQY3 521 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 FAM71BQ8TC56 605 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 ACTRT1Q8TDG2 376 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 CALR3Q96L12 384 aaKnown RBP16.93■□□□□ 0.3
MKS1-204ENST00000537529 GOLPH3Q9H4A6 298 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 AMFRQ9UKV5 643 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 COQ4Q9Y3A0 265 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 MAFBQ9Y5Q3 323 aaPredicted RBP16.93■□□□□ 0.3
MKS1-204ENST00000537529 LCTP09848 1927 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 CEP104O60308 925 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 ABCB4P21439 1286 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 IREB2P48200 963 aaKnown RBP16.93■□□□□ 0.3
MKS1-204ENST00000537529 AARSP49588 968 aaKnown RBP eCLIP16.93■□□□□ 0.3
MKS1-204ENST00000537529 EPHB4P54760 987 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 SEPT14Q6ZU15 432 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 NT5DC3Q86UY8 548 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 IFT20Q8IY31 132 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 SLC35G2Q8TBE7 412 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 SLC20A1Q8WUM9 679 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 ZCCHC17Q9NP64 241 aaKnown RBP16.93■□□□□ 0.3
MKS1-204ENST00000537529 BTBD7Q9P203 1132 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 SYNGAP1Q96PV0 1343 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 PAPPA2Q9BXP8 1791 aa16.93■□□□□ 0.3
MKS1-204ENST00000537529 ADM5C9JUS6 153 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 PGRMC1O00264 195 aaKnown RBP16.92■□□□□ 0.3
MKS1-204ENST00000537529 DDNO94850 711 aaPredicted RBP16.92■□□□□ 0.3
MKS1-204ENST00000537529 USP8P40818 1118 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 GPC3P51654 580 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 RHOT2Q8IXI1 618 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 FAM71AQ8IYT1 594 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 PPM1KQ8N3J5 372 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 PROCA1Q8NCQ7 364 aaPredicted RBP16.92■□□□□ 0.3
MKS1-204ENST00000537529 FBXL13Q8NEE6 735 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 NT5C1BQ96P26 610 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 KRT12Q99456 494 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 TULP1O00294 542 aaPredicted RBP16.92■□□□□ 0.3
MKS1-204ENST00000537529 BUB1BO60566 1050 aaPredicted RBP16.92■□□□□ 0.3
MKS1-204ENST00000537529 LIG4P49917 911 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 IRX3P78415 501 aaPredicted RBP16.92■□□□□ 0.3
MKS1-204ENST00000537529 STRN3Q13033 797 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 EMBQ6PCB8 327 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 RPUSD2Q8IZ73 545 aaKnown RBP16.92■□□□□ 0.3
MKS1-204ENST00000537529 METTL13Q8N6R0 699 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 CNKSR2Q8WXI2 1034 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 SEMA4DQ92854 862 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 SPATC1LQ9H0A9 340 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 KIAA1586Q9HCI6 787 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 TAS2R14Q9NYV8 317 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 TMEM59LQ9UK28 342 aa16.92■□□□□ 0.3
MKS1-204ENST00000537529 EDNRBP24530 442 aa16.91■□□□□ 0.3
MKS1-204ENST00000537529 MRPS25P82663 173 aaKnown RBP16.91■□□□□ 0.3
MKS1-204ENST00000537529 PPATQ06203 517 aa16.91■□□□□ 0.3
MKS1-204ENST00000537529 TAS1R3Q7RTX0 852 aa16.91■□□□□ 0.3
MKS1-204ENST00000537529 NCAPG2Q86XI2 1143 aa16.91■□□□□ 0.3
MKS1-204ENST00000537529 SHC3Q92529 594 aa16.91■□□□□ 0.3
MKS1-204ENST00000537529 KCNN1Q92952 543 aa16.91■□□□□ 0.3
MKS1-204ENST00000537529 KAT5Q92993 513 aa16.91■□□□□ 0.3
MKS1-204ENST00000537529 ARHGEF26Q96DR7 871 aa16.91■□□□□ 0.3
MKS1-204ENST00000537529 HES6Q96HZ4 224 aa16.91■□□□□ 0.3
MKS1-204ENST00000537529 KREMEN1Q96MU8 473 aa16.91■□□□□ 0.3
MKS1-204ENST00000537529 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.91■□□□□ 0.36e-8■■■■■ 30.2
MKS1-204ENST00000537529 THAP2Q9H0W7 228 aa16.91■□□□□ 0.3
MKS1-204ENST00000537529 OSGEPQ9NPF4 335 aa16.91■□□□□ 0.3
MKS1-204ENST00000537529 WDR81Q562E7 1941 aa16.91■□□□□ 0.3
MKS1-204ENST00000537529 A0A0G2JLL6 359 aaPredicted RBP16.9■□□□□ 0.3
MKS1-204ENST00000537529 ZNF233A6NK53 670 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 KIAA0391O15091 583 aaKnown RBP16.9■□□□□ 0.3
MKS1-204ENST00000537529 HEXIM1O94992 359 aaKnown RBP16.9■□□□□ 0.3
MKS1-204ENST00000537529 ZBTB48P10074 688 aaPredicted RBP16.9■□□□□ 0.3
MKS1-204ENST00000537529 UBA1P22314 1058 aaKnown RBP16.9■□□□□ 0.3
MKS1-204ENST00000537529 HADHBP55084 474 aaKnown RBP16.9■□□□□ 0.3
MKS1-204ENST00000537529 RNASE9P60153 205 aaKnown RBP16.9■□□□□ 0.3
MKS1-204ENST00000537529 FSTL1Q12841 308 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 PAK2Q13177 524 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 PTPROQ16827 1216 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 SND1Q7KZF4 910 aaKnown RBP eCLIP16.9■□□□□ 0.3
MKS1-204ENST00000537529 PRRT2Q7Z6L0 340 aaPredicted RBP16.9■□□□□ 0.3
MKS1-204ENST00000537529 PALB2Q86YC2 1186 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 RASGEF1CQ8N431 466 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 ISCUQ9H1K1 167 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 PORCNQ9H237 461 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 DHX33Q9H6R0 707 aaKnown RBP16.9■□□□□ 0.3
MKS1-204ENST00000537529 GDF3Q9NR23 364 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 TOPORSQ9NS56 1045 aaPredicted RBP16.9■□□□□ 0.3
MKS1-204ENST00000537529 RAB20Q9NX57 234 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 NOCTQ9UK39 431 aaKnown RBP16.9■□□□□ 0.3
MKS1-204ENST00000537529 DIS3Q9Y2L1 958 aaKnown RBP16.9■□□□□ 0.3
MKS1-204ENST00000537529 NOC2LQ9Y3T9 749 aaKnown RBP16.9■□□□□ 0.3
MKS1-204ENST00000537529 OTOFQ9HC10 1997 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 DOCK5Q9H7D0 1870 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 IGKV6D-21A0A0A0MT36 114 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 EXTL3O43909 919 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 RTN2O75298 545 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 ATP4AP20648 1035 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 RFC5P40937 340 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 NAMPTP43490 491 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 NNTQ13423 1086 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 TCEAL1Q15170 157 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 FAM160B1Q5W0V3 765 aa16.9■□□□□ 0.3
MKS1-204ENST00000537529 DLK2Q6UY11 383 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms