RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 WNT16Q9UBV4 365 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 CDH22Q9UJ99 828 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 DUSP12Q9UNI6 340 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 FAN1Q9Y2M0 1017 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 GIT1Q9Y2X7 761 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 A0A1B0GUA9 196 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 CCDC194A0A1B0GVG4 234 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 DGAT1O75907 488 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 PDGFBP01127 241 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 POU2F2P09086 479 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 NPR3P17342 541 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 AOC1P19801 751 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 ARL2P36404 184 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 AFF1P51825 1210 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 RNASELQ05823 741 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 SCRN1Q12765 414 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 EMC2Q15006 297 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 RARS2Q5T160 578 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 NOTUMQ6P988 496 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 ELMSAN1Q6PJG2 1045 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 CCDC149Q6ZUS6 474 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 PRIMPOLQ96LW4 560 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 NLRP4Q96MN2 994 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 AIFM3Q96NN9 605 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 CSRNP2Q9H175 543 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 KCNK12Q9HB15 430 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 LIMD1Q9UGP4 676 aa12.51□□□□□ -0.41
CLSTN3-206ENST00000535668 GPR179Q6PRD1 2367 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 ARL5CA6NH57 179 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 GFRA3O60609 400 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 TSPAN1O60635 241 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 CTDNEP1O95476 244 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 ADH1AP07327 375 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 IBSPP21815 317 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 FAM187BQ17R55 369 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 PLA2G4FQ68DD2 849 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 PPP4R3CPQ6ZMV5 832 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 RTL10Q7L3V2 364 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 C12orf76Q8N812 135 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 RNF149Q8NC42 400 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 AUTS2Q8WXX7 1259 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 WASF1Q92558 559 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 BORCS6Q96GS4 357 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 MTMR9Q96QG7 549 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 RTP3Q9BQQ7 232 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 SH2D3AQ9BRG2 576 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 SEMA4AQ9H3S1 761 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 ZDHHC7Q9NXF8 308 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 DBR1Q9UK59 544 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 IPPQ9Y573 584 aa12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 ZFP37Q9Y6Q3 630 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 MTCL1Q9Y4B5 1905 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-206ENST00000535668 C2orf16Q68DN1 1984 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 TEX28O15482 410 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 N4BP1O75113 896 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 FDPSP14324 419 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 KLRC2P26717 231 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 CREMQ03060 361 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 MBTD1Q05BQ5 628 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 TFDP1Q14186 410 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 ANKRD1Q15327 319 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 CWF19L1Q69YN2 538 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 TMC5Q6UXY8 1006 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 ZBTB33Q86T24 672 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 CCDC105Q8IYK2 499 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 TMEM87AQ8NBN3 555 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 STAMQ92783 540 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 ATOH1Q92858 354 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 TMEM143Q96AN5 459 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 ZNF707Q96C28 371 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 SNX27Q96L92 541 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 MTRQ99707 1265 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 APOL5Q9BWW9 433 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 PDRG1Q9NUG6 133 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 KCNJ14Q9UNX9 436 aa12.49□□□□□ -0.41
CLSTN3-206ENST00000535668 PRR23AA6NEV1 266 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 ANHXE9PGG2 379 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 CCNT1O60563 726 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 BAG4O95429 457 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 URODP06132 367 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 ASGR2P07307 311 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 SRGAP2CP0DJJ0 459 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 ITGA4P13612 1032 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 GLUD2P49448 558 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 RARRES1P49788 294 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 NCBP1Q09161 790 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 ORC2Q13416 577 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 EARS2Q5JPH6 523 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 CDCA2Q69YH5 1023 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 PHLDB3Q6NSJ2 640 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 OXER1Q8TDS5 423 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 FAM193BQ96PV7 902 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 RNF39Q9H2S5 420 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 FZD8Q9H461 694 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 SLC2A4RGQ9NR83 387 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 TSHZ2Q9NRE2 1034 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 RGL1Q9NZL6 768 aa12.48□□□□□ -0.41
CLSTN3-206ENST00000535668 TPCN1Q9ULQ1 816 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms