RNA–Protein interactions for RNA: ENST00000533078.5

CMTM1-216, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-216ENST00000533078 BLIDQ8IZY5 108 aa12.9□□□□□ -0.34
CMTM1-216ENST00000533078 FAM177A1Q8N128 213 aaPredicted RBP12.9□□□□□ -0.34
CMTM1-216ENST00000533078 PRPF31Q8WWY3 499 aaKnown RBP12.9□□□□□ -0.34
CMTM1-216ENST00000533078 SHDQ96IW2 340 aa12.9□□□□□ -0.34
CMTM1-216ENST00000533078 ZDHHC7Q9NXF8 308 aa12.9□□□□□ -0.34
CMTM1-216ENST00000533078 SIT1Q9Y3P8 196 aa12.9□□□□□ -0.34
CMTM1-216ENST00000533078 LILRB3O75022 631 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 DEXIO95424 95 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 C1RP00736 705 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 CPA1P15085 419 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 RPS6KB1P23443 525 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 CCT2P78371 535 aaKnown RBP12.89□□□□□ -0.35
CMTM1-216ENST00000533078 LAMTOR4Q0VGL1 99 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 TFDP1Q14186 410 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 PHLDB3Q6NSJ2 640 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 GET4Q7L5D6 327 aaPredicted RBP12.89□□□□□ -0.35
CMTM1-216ENST00000533078 KRT25Q7Z3Z0 450 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 FBXL16Q8N461 479 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 SLC44A3Q8N4M1 653 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 RNF149Q8NC42 400 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 ETNPPLQ8TBG4 499 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 RIN2Q8WYP3 895 aaPredicted RBP12.89□□□□□ -0.35
CMTM1-216ENST00000533078 TMEM143Q96AN5 459 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 FAM20AQ96MK3 541 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 CCDC43Q96MW1 224 aaKnown RBP12.89□□□□□ -0.35
CMTM1-216ENST00000533078 CEP89Q96ST8 783 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 NAP1L4Q99733 375 aaKnown RBP12.89□□□□□ -0.35
CMTM1-216ENST00000533078 RXFP1Q9HBX9 757 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 ARHGEF3Q9NR81 526 aa12.89□□□□□ -0.35
CMTM1-216ENST00000533078 ZFP37Q9Y6Q3 630 aaPredicted RBP12.89□□□□□ -0.35
CMTM1-216ENST00000533078 CCDC194A0A1B0GVG4 234 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 KRBA1A5PL33 1030 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 ARL5CA6NH57 179 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 B4GALT3O60512 393 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 RFPL2O75678 378 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 STBD1O95210 358 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 XBP1P17861 261 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 MLH1P40692 756 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 NPEPPSP55786 919 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 DSG1Q02413 1049 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 PPP2R5CQ13362 524 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 MXD4Q14582 209 aaPredicted RBP12.88□□□□□ -0.35
CMTM1-216ENST00000533078 PUM1Q14671 1186 aaKnown RBP eCLIP12.88□□□□□ -0.35
CMTM1-216ENST00000533078 NTRK3Q16288 839 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 USP41Q3LFD5 358 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 DCLRE1AQ6PJP8 1040 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 B3GNT9Q6UX72 402 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 PALB2Q86YC2 1186 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 KIAA2013Q8IYS2 634 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 RSAD2Q8WXG1 361 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 RUBCNQ92622 972 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 MTRQ99707 1265 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 DHX33Q9H6R0 707 aaKnown RBP12.88□□□□□ -0.35
CMTM1-216ENST00000533078 GIT1Q9Y2X7 761 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 IPPQ9Y573 584 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 R4GN57 208 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 CACNA1AO00555 2505 aa12.88□□□□□ -0.35
CMTM1-216ENST00000533078 INO80B-WBP1J3KQ70 363 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 KINO60870 393 aaKnown RBP12.87□□□□□ -0.35
CMTM1-216ENST00000533078 N4BP1O75113 896 aaKnown RBP12.87□□□□□ -0.35
CMTM1-216ENST00000533078 DCNP07585 359 aaKnown RBP12.87□□□□□ -0.35
CMTM1-216ENST00000533078 MYBP10242 640 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 GCFC2P16383 781 aaKnown RBP12.87□□□□□ -0.35
CMTM1-216ENST00000533078 PDIA3P30101 505 aaKnown RBP12.87□□□□□ -0.35
CMTM1-216ENST00000533078 HOXA11P31270 313 aaPredicted RBP12.87□□□□□ -0.35
CMTM1-216ENST00000533078 YWHABP31946 246 aaKnown RBP12.87□□□□□ -0.35
CMTM1-216ENST00000533078 SCNN1GP51170 649 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 EMC2Q15006 297 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 XKR9Q5GH70 373 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 LIN9Q5TKA1 542 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 KIAA0319Q5VV43 1072 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 FERMT3Q86UX7 667 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 C1orf210Q8IVY1 113 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 COLGALT2Q8IYK4 626 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 GPR65Q8IYL9 337 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 DAGLBQ8NCG7 672 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 GPR152Q8TDT2 470 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 SECISBP2LQ93073 1101 aaKnown RBP12.87□□□□□ -0.35
CMTM1-216ENST00000533078 BORCS6Q96GS4 357 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 MBOAT7Q96N66 472 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 MYADMQ96S97 322 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 GAD1Q99259 594 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 LXNQ9BS40 222 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 APOL6Q9BWW8 343 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 NCOA5Q9HCD5 579 aaKnown RBP12.87□□□□□ -0.35
CMTM1-216ENST00000533078 BMP2KQ9NSY1 1161 aaPredicted RBP12.87□□□□□ -0.35
CMTM1-216ENST00000533078 MARCH5Q9NX47 278 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 FNIP2Q9P278 1114 aa12.87□□□□□ -0.35
CMTM1-216ENST00000533078 TDRD15B5MCY1 1934 aaKnown RBP12.86□□□□□ -0.35
CMTM1-216ENST00000533078 TGM5O43548 720 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 EDIL3O43854 480 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 TADA2AO75478 443 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 REC8O95072 547 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 BAG4O95429 457 aaKnown RBP12.86□□□□□ -0.35
CMTM1-216ENST00000533078 SPATA31D3P0C874 917 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 LAMP2P13473 410 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 FSHRP23945 695 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 AFF1P51825 1210 aaKnown RBP12.86□□□□□ -0.35
CMTM1-216ENST00000533078 EPHA7Q15375 998 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 INF2Q27J81 1249 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms