RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 ASB1Q9Y576 335 aa4.09□□□□□ -1.75
CD44-229ENST00000528672 HMGB1P1B2RPK0 211 aaPredicted RBP4.08□□□□□ -1.76
CD44-229ENST00000528672 OPHN1O60890 802 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 NDUFS2O75306 463 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 KLHL18O94889 574 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 MTHFD2P13995 350 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 ZNF28P17035 718 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 BMP7P18075 431 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 RHCEP18577 417 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 EDNRBP24530 442 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 SERPINB3P29508 390 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 MTNR1BP49286 362 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 SLC5A3P53794 718 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 AK2P54819 239 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 GJA9P57773 515 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 RHDQ02161 417 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 KIF23Q02241 960 aaPredicted RBP4.08□□□□□ -1.76
CD44-229ENST00000528672 ADAM15Q13444 863 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 LLGL1Q15334 1064 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.08□□□□□ -1.76
CD44-229ENST00000528672 WDR72Q3MJ13 1102 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 TOGARAM2Q6ZUX3 1019 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 MYPNQ86TC9 1320 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 PHYKPLQ8IUZ5 450 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 ZBTB34Q8NCN2 500 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 PIK3C3Q8NEB9 887 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 CXorf38Q8TB03 319 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 PARD3BQ8TEW8 1205 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 DIS3LQ8TF46 1054 aaKnown RBP4.08□□□□□ -1.76
CD44-229ENST00000528672 PPM1EQ8WY54 764 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 RIN2Q8WYP3 895 aaPredicted RBP4.08□□□□□ -1.76
CD44-229ENST00000528672 GJA10Q969M2 543 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 FERMT2Q96AC1 680 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 FAM193BQ96PV7 902 aaPredicted RBP4.08□□□□□ -1.76
CD44-229ENST00000528672 ACO2Q99798 780 aaKnown RBP4.08□□□□□ -1.76
CD44-229ENST00000528672 FOXB1Q99853 325 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 GTPBP4Q9BZE4 634 aaKnown RBP4.08□□□□□ -1.76
CD44-229ENST00000528672 PTPRHQ9HD43 1115 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 NLRC4Q9NPP4 1024 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 KLHL11Q9NVR0 708 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 PRSS50Q9UI38 385 aa4.08□□□□□ -1.76
CD44-229ENST00000528672 TPP1O14773 563 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 ADCY6O43306 1168 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 NOBOXO60393 691 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 FOXD2O60548 495 aaPredicted RBP4.07□□□□□ -1.76
CD44-229ENST00000528672 PPFIA4O75335 1185 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 TCEA3O75764 348 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 ZBED1O96006 694 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 MYL3P08590 195 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 PDCP20941 246 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 PTTG1IPP53801 180 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 MRPS9P82933 396 aaKnown RBP4.07□□□□□ -1.76
CD44-229ENST00000528672 KIAA2012Q0VF49 1180 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 IL10RAQ13651 578 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 RAPGEF1Q13905 1077 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 STILQ15468 1287 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 UAP1L1Q3KQV9 507 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 C3orf36Q3SXR2 165 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 INO80DQ53TQ3 878 aaPredicted RBP4.07□□□□□ -1.76
CD44-229ENST00000528672 FAM83BQ5T0W9 1011 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 KIAA1841Q6NSI8 718 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 TIGD7Q6NT04 549 aaPredicted RBP4.07□□□□□ -1.76
CD44-229ENST00000528672 C1orf228Q6PIY5 440 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 ABHD15Q6UXT9 468 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 CCDC149Q6ZUS6 474 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 SRLQ86TD4 932 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 FAM124AQ86V42 546 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 ZNF761Q86XN6 746 aaPredicted RBP4.07□□□□□ -1.76
CD44-229ENST00000528672 FAM186BQ8IYM0 893 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 IFNL2Q8IZJ0 200 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 CAMKK1Q8N5S9 505 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.07□□□□□ -1.76
CD44-229ENST00000528672 ACRBPQ8NEB7 543 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 VPS37AQ8NEZ2 397 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 OR5AN1Q8NGI8 311 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 ADAMTS17Q8TE56 1095 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 PNISRQ8TF01 805 aaKnown RBP4.07□□□□□ -1.76
CD44-229ENST00000528672 KAT5Q92993 513 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 C1GALT1C1Q96EU7 318 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 RAX2Q96IS3 184 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 MYD88Q99836 296 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 NOL10Q9BSC4 688 aaKnown RBP4.07□□□□□ -1.76
CD44-229ENST00000528672 NAA15Q9BXJ9 866 aaKnown RBP4.07□□□□□ -1.76
CD44-229ENST00000528672 PLCB1Q9NQ66 1216 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 LIMCH1Q9UPQ0 1083 aa4.07□□□□□ -1.76
CD44-229ENST00000528672 C2orf78A6NCI8 922 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 LRRC14BA6NHZ5 514 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 A6NNZ2 444 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 NPHP1O15259 732 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 DTNBO60941 627 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 TMEM127O75204 238 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 MAFO75444 373 aaPredicted RBP4.06□□□□□ -1.76
CD44-229ENST00000528672 WDHD1O75717 1129 aaPredicted RBP4.06□□□□□ -1.76
CD44-229ENST00000528672 HRGP04196 525 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 SLC16A1P53985 500 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 SETQ01105 290 aaPredicted RBP4.06□□□□□ -1.76
CD44-229ENST00000528672 ROM1Q03395 351 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 PPP3CAQ08209 521 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 MGAT5Q09328 741 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 CHAF1AQ13111 956 aaPredicted RBP4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms