RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 DUSP2Q05923 314 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 CRHR2Q13324 411 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 CSRP2Q16527 193 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 TOR2AQ5JU69 321 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 FNDC7Q5VTL7 733 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 MFSD5Q6N075 450 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 SLC16A11Q8NCK7 471 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 ATL2Q8NHH9 583 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 SNX33Q8WV41 574 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 ATXN2LQ8WWM7 1075 aaKnown RBP5.6□□□□□ -1.51
CD44-217ENST00000525348 AHCYL2Q96HN2 611 aaKnown RBP5.6□□□□□ -1.51
CD44-217ENST00000525348 RAX2Q96IS3 184 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 PLEKHG4BQ96PX9 1271 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 GPR87Q9BY21 358 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 ZNF341Q9BYN7 854 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 TRIM8Q9BZR9 551 aa5.6□□□□□ -1.51
CD44-217ENST00000525348 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.6□□□□□ -1.51
CD44-217ENST00000525348 ZMYM3Q14202 1370 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 GRXCR1A8MXD5 290 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 WNT10BO00744 389 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 ADCY6O43306 1168 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 CPEP16870 476 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 HK1P19367 917 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 ACVRL1P37023 503 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 MAN2A2P49641 1150 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 MRPS9P82933 396 aaKnown RBP5.59□□□□□ -1.51
CD44-217ENST00000525348 MEF2AQ02078 507 aaPredicted RBP5.59□□□□□ -1.51
CD44-217ENST00000525348 TOB2Q14106 344 aaPredicted RBP5.59□□□□□ -1.51
CD44-217ENST00000525348 MUM1Q2TAK8 710 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 C19orf54Q5BKX5 351 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 APBB1IPQ7Z5R6 666 aaPredicted RBP5.59□□□□□ -1.51
CD44-217ENST00000525348 GLB1L3Q8NCI6 653 aaPredicted RBP5.59□□□□□ -1.51
CD44-217ENST00000525348 ST8SIA2Q92186 375 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 IL17RAQ96F46 866 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 MNTQ99583 582 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 SPC25Q9HBM1 224 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 CCM2LQ9NUG4 571 aaPredicted RBP5.59□□□□□ -1.51
CD44-217ENST00000525348 SCOCQ9UIL1 159 aa5.59□□□□□ -1.51
CD44-217ENST00000525348 XDHP47989 1333 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 K7ESF4 209 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 NARSO43776 548 aaKnown RBP5.58□□□□□ -1.52
CD44-217ENST00000525348 DNAJC6O75061 913 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 ITGA10O75578 1167 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 SLPIP03973 132 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 GYPEP15421 78 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 GZMKP49863 264 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 CNGB1Q14028 1251 aaPredicted RBP5.58□□□□□ -1.52
CD44-217ENST00000525348 ADRM1Q16186 407 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 LSM12Q3MHD2 195 aaKnown RBP5.58□□□□□ -1.52
CD44-217ENST00000525348 RNF219Q5W0B1 726 aaPredicted RBP5.58□□□□□ -1.52
CD44-217ENST00000525348 ANKS6Q68DC2 871 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 XYLT1Q86Y38 959 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 GSPT2Q8IYD1 628 aaKnown RBP5.58□□□□□ -1.52
CD44-217ENST00000525348 OR52N2Q8NGI0 321 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 AUTS2Q8WXX7 1259 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 CSRNP2Q9H175 543 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 IFT122Q9HBG6 1241 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 DMRT3Q9NQL9 472 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 AURKAIP1Q9NWT8 199 aaPredicted RBP5.58□□□□□ -1.52
CD44-217ENST00000525348 HS3ST3A1Q9Y663 406 aa5.58□□□□□ -1.52
CD44-217ENST00000525348 FAM20BO75063 409 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 MFAP3LO75121 409 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 IPO13O94829 963 aaKnown RBP5.57□□□□□ -1.52
CD44-217ENST00000525348 GNAT2P19087 354 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 MTNR1BP49286 362 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 PPP3CAQ08209 521 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 KLF10Q13118 480 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 MST1LQ2TV78 715 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 NAIF1Q69YI7 327 aaPredicted RBP5.57□□□□□ -1.52
CD44-217ENST00000525348 BTNL9Q6UXG8 535 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 Q6ZVL8 140 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 GPRIN1Q7Z2K8 1008 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 REPS2Q8NFH8 660 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 MDM1Q8TC05 714 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 RIN2Q8WYP3 895 aaPredicted RBP5.57□□□□□ -1.52
CD44-217ENST00000525348 CEP95Q96GE4 821 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 CPPED1Q9BRF8 314 aaPredicted RBP5.57□□□□□ -1.52
CD44-217ENST00000525348 GPRC5DQ9NZD1 345 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 TRPS1Q9UHF7 1281 aa5.57□□□□□ -1.52
CD44-217ENST00000525348 ING1Q9UK53 422 aaPredicted RBP5.57□□□□□ -1.52
CD44-217ENST00000525348 RPTORQ8N122 1335 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 FZD7O75084 574 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 ZNF202O95125 648 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 OSMP13725 252 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 ADSLP30566 484 aaPredicted RBP5.56□□□□□ -1.52
CD44-217ENST00000525348 CDKN1CP49918 316 aaPredicted RBP5.56□□□□□ -1.52
CD44-217ENST00000525348 AMPD3Q01432 767 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 APBA1Q02410 837 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 TUBA3CQ13748 450 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 DCAF17Q5H9S7 520 aaPredicted RBP5.56□□□□□ -1.52
CD44-217ENST00000525348 MFSD14BQ5SR56 506 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 PRAMEF14Q5SWL7 426 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 TUBA3EQ6PEY2 450 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 DOK3Q7L591 496 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 ZFPM1Q8IX07 1006 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 CBARPQ8N350 705 aaPredicted RBP5.56□□□□□ -1.52
CD44-217ENST00000525348 CNTD1Q8N815 330 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 ZNF480Q8WV37 535 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 HOXB13Q92826 284 aaPredicted RBP5.56□□□□□ -1.52
CD44-217ENST00000525348 PDCD2LQ9BRP1 358 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms