RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 ZFP91Q96JP5 570 aaPredicted RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 GAS2L1Q99501 681 aaPredicted RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 ZWILCHQ9H900 591 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 GSTA4O15217 222 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 BUB1O43683 1085 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 ALDH2P05091 517 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 IGFBP4P22692 258 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 HPDP32754 393 aaPredicted RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 PSMC1P62191 440 aaKnown RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 SP3Q02447 781 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 RASSF7Q02833 373 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 SGSM1Q2NKQ1 1148 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 SLFNL1Q499Z3 407 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 MAP1SQ66K74 1059 aaPredicted RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 TMC7Q7Z402 723 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 CSGALNACT1Q8TDX6 532 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 RIN2Q8WYP3 895 aaPredicted RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 ARHGEF2Q92974 986 aaKnown RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 ATG4CQ96DT6 458 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 TMEM39BQ9GZU3 492 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 C17orf75Q9HAS0 396 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 ABCF3Q9NUQ8 709 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 DDX41Q9UJV9 622 aaKnown RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 RCOR1Q9UKL0 485 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 CLTAP09496 248 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 SRGNP10124 158 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 OXCT1P55809 520 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 NR5A1Q13285 461 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 STARD3Q14849 445 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 ZNF746Q6NUN9 644 aaPredicted RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 HOMEZQ8IX15 550 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 ZNF557Q8N988 423 aaPredicted RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 DEPDC1BQ8WUY9 529 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 LZICQ8WZA0 190 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 RABEP2Q9H5N1 569 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 PLEKHA5Q9HAU0 1116 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 LMTK2Q8IWU2 1503 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 DLC1Q96QB1 1528 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 MROH7Q68CQ1 1323 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 FRMPD1Q5SYB0 1578 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 EFCAB14O75071 495 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 TRPA1O75762 1119 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 MT-ND3P03897 115 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 CAPN2P17655 700 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 TAF6P49848 677 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 THEMIS2Q5TEJ8 643 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 TRIM67Q6ZTA4 783 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 CENPUQ71F23 418 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 TTC30BQ8N4P2 665 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 TTC8Q8TAM2 541 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 LRRC8CQ8TDW0 803 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 NDST4Q9H3R1 872 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 CATSPERBQ9H7T0 1116 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 VTA1Q9NP79 307 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 VPS18Q9P253 973 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 SFI1A8K8P3 1242 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 EFCAB8A8MWE9 144 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 HIP1RO75146 1068 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 ICAM1P05362 532 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 ATXN8OSP0DMR3 200 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 ACADMP11310 421 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 MX2P20592 715 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 MAP4P27816 1152 aaKnown RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 GNA15P30679 374 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 DYNLT1P63172 113 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 PRAMEP78395 509 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 EMC2Q15006 297 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 SYTL3Q4VX76 610 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 SLC45A4Q5BKX6 768 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 PPP6R3Q5H9R7 873 aaPredicted RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 TMEM270Q6UE05 265 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 LINC00301Q8NCQ3 95 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 RNF217Q8TC41 542 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 FAF2Q96CS3 445 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 PAGE5Q96GU1 130 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 FHDC1Q9C0D6 1143 aaPredicted RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 FANCLQ9NW38 375 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 CNOT8Q9UFF9 292 aaKnown RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 ORC6Q9Y5N6 252 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 RASGRF2O14827 1237 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 CTNNA1P35221 906 aaKnown RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 ATN1P54259 1190 aaPredicted RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 GPC5P78333 572 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 CUL1Q13616 776 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 TBCCQ15814 346 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 IMPG1Q17R60 797 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 ZNF394Q53GI3 561 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 ATF7IP2Q5U623 682 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 TRIM48Q8IWZ4 208 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 ANKRD42Q8N9B4 389 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 DNERQ8NFT8 737 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 CDK5RAP1Q96SZ6 601 aaKnown RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 UTP6Q9NYH9 597 aaKnown RBP4.52□□□□□ -1.69
VCAN-209ENST00000513016 TRPM5Q9NZQ8 1165 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 BFARQ9NZS9 450 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 MAN1B1Q9UKM7 699 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 MYPNQ86TC9 1320 aa4.52□□□□□ -1.69
VCAN-209ENST00000513016 IQANK1A0A1B0GTG1 560 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 TMEM88BA6NKF7 163 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 PGRMC1O00264 195 aaKnown RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms