RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 MMP14P50281 582 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 VAMP7P51809 220 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 KIF22Q14807 665 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 PLCB4Q15147 1175 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 PPP2R5AQ15172 486 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 LONRF1Q17RB8 773 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 C3orf20Q8ND61 904 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 GMCL1Q96IK5 515 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 TMX4Q9H1E5 349 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 CYP3A4P08684 503 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 CLTAP09496 248 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 POLR2MP0CAP2 368 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 ADCY1Q08828 1119 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 CETN1Q12798 172 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 TATDN1Q6P1N9 297 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 PADI6Q6TGC4 694 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 TBC1D1Q86TI0 1168 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 ATXN2LQ8WWM7 1075 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 TBC1D31Q96DN5 1066 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 PGM2Q96G03 612 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 FAM84AQ96KN4 292 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 CXorf56Q9H5V9 222 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 COL24A1Q17RW2 1714 aa9.96□□□□□ -0.82
LIMCH1-215ENST00000512632 MAP2K1Q02750 393 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 MSL1Q68DK7 614 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 ARMC9Q7Z3E5 817 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 NOP9Q86U38 636 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 SLC47A2Q86VL8 602 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 PLEKHO2Q8TD55 490 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 DDX23Q9BUQ8 820 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 FBXO28Q9NVF7 368 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 SAMD15Q9P1V8 674 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 SYNGAP1Q96PV0 1343 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 EP400Q96L91 3159 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 PEX5P50542 639 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 STAT2P52630 851 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 EPC2Q52LR7 807 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 C6orf118Q5T5N4 469 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 ANKS4BQ8N8V4 417 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 ANKRD42Q8N9B4 389 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 CSRNP1Q96S65 589 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 GEMIN8Q9NWZ8 242 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 SEL1LQ9UBV2 794 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 NHSQ6T4R5 1651 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 MIF4GDA9UHW6 222 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 IPO5O00410 1097 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 CLDN3O15551 220 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 COILP38432 576 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 DRG2P55039 364 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 GSCP56915 257 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 SLC13A5Q86YT5 568 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 GIMAP7Q8NHV1 300 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 ZNF653Q96CK0 615 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 KCNK9Q9NPC2 374 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 NRAPQ86VF7 1730 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 ARFGEF1Q9Y6D6 1849 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 PODXLO00592 558 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 RIPK2O43353 540 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 ZNF131P52739 623 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 AUHQ13825 339 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 SLC5A5Q92911 643 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 PWWP2AQ96N64 755 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 NUP85Q9BW27 656 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 GPRC5CQ9NQ84 441 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 MTUS1Q9ULD2 1270 aa9.95□□□□□ -0.82
LIMCH1-215ENST00000512632 DLATP10515 647 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 CHRNB2P17787 502 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 CALCOCO2Q13137 446 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 PPP2R5CQ13362 524 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 C2CD6Q53TS8 623 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 GMCL1P1Q8NEA9 526 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 ATG4AQ8WYN0 398 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 ABCF3Q9NUQ8 709 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 LARSQ9P2J5 1176 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 ASIC3Q9UHC3 531 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 AHDC1Q5TGY3 1603 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 PPIP5K2O43314 1243 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 RPSAP08865 295 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 MXI1P50539 228 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 ADCY2Q08462 1091 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 LACTB2Q53H82 288 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 EXOC3L1Q86VI1 746 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 CCDC63Q8NA47 563 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 ZNF564Q8TBZ8 553 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 EPS8L1Q8TE68 723 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 ODF2LQ9ULJ1 636 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 RTN2O75298 545 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 XRCC4Q13426 336 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 DHX38Q92620 1227 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 CENPTQ96BT3 561 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 SAAL1Q96ER3 474 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 PRMT6Q96LA8 375 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 KREMEN1Q96MU8 473 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 FAM118BQ9BPY3 351 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 TEKT3Q9BXF9 490 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 KDM4CQ9H3R0 1056 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 CTNNAL1Q9UBT7 734 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 PCYOX1Q9UHG3 505 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 ATP8B3O60423 1300 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 TCP10L2B9ZVM9 353 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms