RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 KREMEN2Q8NCW0 462 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 FEZF2Q8TBJ5 459 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 CCDC51Q96ER9 411 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 KLHL5Q96PQ7 755 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 APOL6Q9BWW8 343 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 EMILIN2Q9BXX0 1053 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 ANKEF1Q9NU02 776 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 MARCH5Q9NX47 278 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 PRG3Q9Y2Y8 225 aaPredicted RBP12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 HES2Q9Y543 173 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 A0A087WWV3 80 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 POTEMA6NI47 508 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 SPDYE4A6NLX3 237 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 ALDH2P05091 517 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 CNPP09543 421 aaKnown RBP12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 GLRA2P23416 452 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 KLRC2P26717 231 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 ARL2P36404 184 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 MLH1P40692 756 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 VCPP55072 806 aaKnown RBP12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 MTMR3Q13615 1198 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 PCBP1Q15365 356 aaKnown RBP eCLIP12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 AMHR2Q16671 573 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 ATAT1Q5SQI0 421 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 TMC5Q6UXY8 1006 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 CABP7Q86V35 215 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 COLGALT2Q8IYK4 626 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 TDRD5Q8NAT2 981 aaKnown RBP12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 PIGOQ8TEQ8 1089 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 MTMR9Q96QG7 549 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 GAD1Q99259 594 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 HERC2P3Q9BVR0 1158 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 CSRNP2Q9H175 543 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 POLR3FQ9H1D9 316 aaPredicted RBP12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 TMEM60Q9H2L4 133 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 RNF39Q9H2S5 420 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 SFXN1Q9H9B4 322 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 UBN1Q9NPG3 1134 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 MRPL17Q9NRX2 175 aaKnown RBP12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 STK39Q9UEW8 545 aa12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 DBR1Q9UK59 544 aaKnown RBP12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 MTCL1Q9Y4B5 1905 aaKnown RBP12.83□□□□□ -0.36
HMGCS1-204ENST00000507293 ARL5CA6NH57 179 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 C2CD2LO14523 706 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 INPPL1O15357 1258 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 B4GALT5O43286 388 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 USO1O60763 962 aaKnown RBP12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 LILRB3O75022 631 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 SOD2P04179 222 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 URODP06132 367 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 ARF4P18085 180 aaPredicted RBP12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 ATP2B1P20020 1258 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 OR1G1P47890 313 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 SCNN1GP51170 649 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 CLCN4P51793 760 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 PTPN5P54829 565 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 GUCY1B3Q02153 619 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 POU5F1BQ06416 359 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 NCBP1Q09161 790 aaKnown RBP12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 ZDHHC14Q8IZN3 488 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 ZFP42Q96MM3 310 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 TRIM6Q9C030 488 aaPredicted RBP12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 SMOC2Q9H3U7 446 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 NXF3Q9H4D5 531 aaKnown RBP12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 MIOSQ9NXC5 875 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 SORCS3Q9UPU3 1222 aa12.82□□□□□ -0.36
HMGCS1-204ENST00000507293 F8W810 466 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 NPTXRO95502 500 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 BRD1O95696 1058 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 PDGFBP01127 241 aaPredicted RBP12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 ASGR2P07307 311 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 MCM7P33993 719 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 DSC1Q08554 894 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 MAEAQ7L5Y9 396 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 TAS1R1Q7RTX1 841 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 GPR149Q86SP6 731 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 CDR2LQ86X02 465 aaPredicted RBP12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 HACE1Q8IYU2 909 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 PHOX2BQ99453 314 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 PRRX2Q99811 253 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 NFKBIZQ9BYH8 718 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 GPRC5CQ9NQ84 441 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 GIT1Q9Y2X7 761 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 ZDBF2Q9HCK1 2354 aa12.81□□□□□ -0.36
HMGCS1-204ENST00000507293 LRRIQ4A6NIV6 560 aa12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 MED24O75448 989 aa12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 SEC24BO95487 1268 aa12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 SPATA31C1P0DKV0 1188 aa12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 XRCC6P12956 609 aaKnown RBP eCLIP12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 AKAP5P24588 427 aa12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 AVPR2P30518 371 aa12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 GLUD2P49448 558 aa12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 TCF15Q12870 199 aa12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 SAFBQ15424 915 aaKnown RBP eCLIP12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 SLC27A1Q6PCB7 646 aa12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 CCDC149Q6ZUS6 474 aa12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 CCDC83Q8IWF9 413 aa12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 UBALD2Q8IYN6 164 aa12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 RNF168Q8IYW5 571 aaPredicted RBP12.8□□□□□ -0.36
HMGCS1-204ENST00000507293 PLCD3Q8N3E9 789 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms