RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 FAM13CQ8NE31 585 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 ASAP3Q8TDY4 903 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 SYT15Q9BQS2 421 aa18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 FRMPD2Q68DX3 1309 aaPredicted RBP18.35■□□□□ 0.53
SQSTM1-211ENST00000506690 POTEFA5A3E0 1075 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 SMIM24O75264 130 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 TCEA3O75764 348 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 POTEIP0CG38 1075 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 POTEJP0CG39 1038 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 ACADSP16219 412 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 TNFAIP3P21580 790 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 PCK1P35558 622 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 RPS6KA3P51812 740 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 TRAF1Q13077 416 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 SIX1Q15475 284 aaPredicted RBP18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 VPS72Q15906 364 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 GNPTABQ3T906 1256 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 POTEEQ6S8J3 1075 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 ARHGEF18Q6ZSZ5 1173 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 CERKQ8TCT0 537 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 INPP5DQ92835 1189 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 REEP2Q9BRK0 252 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 PTPN22Q9Y2R2 807 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 SPATA31A6Q5VVP1 1343 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 TCRBV7S2A1N4TA0A589 114 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 YARSP54577 528 aaKnown RBP18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 MXRA7P84157 204 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 CALCOCO2Q13137 446 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 SEL1L2Q5TEA6 688 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 POTEGQ6S5H5 508 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 MIGA2Q7L4E1 593 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 MAPKAPK5Q8IW41 473 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 GALNT15Q8N3T1 639 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 ZFAND2BQ8WV99 257 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 RPS6KC1Q96S38 1066 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 WHRNQ9P202 907 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 PCDHB13Q9Y5F0 798 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 ADGRA3Q8IWK6 1321 aa18.34■□□□□ 0.53
SQSTM1-211ENST00000506690 TULP1O00294 542 aaPredicted RBP18.33■□□□□ 0.53
SQSTM1-211ENST00000506690 BAG3O95817 575 aa18.33■□□□□ 0.53
SQSTM1-211ENST00000506690 CNGA1P29973 690 aa18.33■□□□□ 0.53
SQSTM1-211ENST00000506690 POLGP54098 1239 aaPredicted RBP18.33■□□□□ 0.53
SQSTM1-211ENST00000506690 CTTNQ14247 550 aaKnown RBP18.33■□□□□ 0.53
SQSTM1-211ENST00000506690 RHBDF2Q6PJF5 856 aa18.33■□□□□ 0.53
SQSTM1-211ENST00000506690 C12orf50Q8NA57 414 aaPredicted RBP18.33■□□□□ 0.53
SQSTM1-211ENST00000506690 PITPNM3Q9BZ71 974 aa18.33■□□□□ 0.53
SQSTM1-211ENST00000506690 CDK5RAP2Q96SN8 1893 aa18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 MAP3K13O43283 966 aa18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 RTN3O95197 1032 aaPredicted RBP18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 LDHBP07195 334 aaKnown RBP18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 PYGMP11217 842 aa18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 FOXN2P32314 431 aa18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 GCLCP48506 637 aaPredicted RBP18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 STRN3Q13033 797 aa18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 SNX1Q13596 522 aa18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 INTS8Q75QN2 995 aaKnown RBP18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 TXNRD3Q86VQ6 643 aa18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 SH3TC2Q8TF17 1288 aa18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 TEKT4Q8WW24 435 aa18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 NUDCD1Q96RS6 583 aa18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 LGALS13Q9UHV8 139 aa18.33■□□□□ 0.52
SQSTM1-211ENST00000506690 CLIC2O15247 247 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 TTC4O95801 387 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 KCNJ1P48048 391 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 RNASELQ05823 741 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 KLC1Q07866 573 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 KIF22Q14807 665 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 ASPRV1Q53RT3 343 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 SLC13A5Q86YT5 568 aaPredicted RBP18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 CYP4X1Q8N118 509 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 SYT2Q8N9I0 419 aaPredicted RBP18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 SLCO2A1Q92959 643 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 CD101Q93033 1021 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 ERP27Q96DN0 273 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 UIMC1Q96RL1 719 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 MTUS1Q9ULD2 1270 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 CHKBQ9Y259 395 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 MYH14Q7Z406 1995 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 FAM170AA1A519 330 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 PPP1R11O60927 126 aaPredicted RBP18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 PDHA1P08559 390 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 STAT3P40763 770 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 PTDSS1P48651 473 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 FMO5P49326 533 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 PSMC6P62333 389 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 SETDB1Q15047 1291 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 WASHC2DQ5SRD0 308 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 APBB1IPQ7Z5R6 666 aaPredicted RBP18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 VSIG1Q86XK7 387 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 CATSPER3Q86XQ3 398 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 SLC7A6OSQ96CW6 309 aaPredicted RBP18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 NAP1L4Q99733 375 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 CTTNBP2NLQ9P2B4 639 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 STARD13Q9Y3M8 1113 aa18.32■□□□□ 0.52
SQSTM1-211ENST00000506690 PNMA6FA0A0J9YX94 578 aa18.31■□□□□ 0.52
SQSTM1-211ENST00000506690 TGFB1I1O43294 461 aa18.31■□□□□ 0.52
SQSTM1-211ENST00000506690 ECEL1O95672 775 aa18.31■□□□□ 0.52
SQSTM1-211ENST00000506690 COMTP21964 271 aa18.31■□□□□ 0.52
SQSTM1-211ENST00000506690 TARSP26639 723 aaKnown RBP18.31■□□□□ 0.52
SQSTM1-211ENST00000506690 CHKAP35790 457 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms