RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ZWILCHQ9H900 591 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 TXLNGQ9NUQ3 528 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 SMARCAL1Q9NZC9 954 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 GAKO14976 1311 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 ICAM1P05362 532 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 ARL1P40616 181 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 PHKA2P46019 1235 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 EFNA5P52803 228 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 ZNF568Q3ZCX4 644 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 THNSL1Q8IYQ7 743 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 GBP7Q8N8V2 638 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 TPCN2Q8NHX9 752 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 GDAP1Q8TB36 358 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 ANKZF1Q9H8Y5 726 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 ARHGAP20Q9P2F6 1191 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 CD2APQ9Y5K6 639 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 ARFGEF2Q9Y6D5 1785 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 TTI1O43156 1089 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 MT-ND3P03897 115 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 SCP2P22307 547 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 MEA1Q16626 185 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 TRIM59Q8IWR1 403 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 MOV10L1Q9BXT6 1211 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 SPC25Q9HBM1 224 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 TMEM8AQ9HCN3 771 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 CAPN6Q9Y6Q1 641 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 C19orf81C9J6K1 198 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 COPB2P35606 906 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 ARL4CP56559 192 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 ADCY1Q08828 1119 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 TBC1D31Q96DN5 1066 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 MTMR9Q96QG7 549 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 NAGPAQ9UK23 515 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 PNMA3Q9UL41 463 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 IQANK1A0A1B0GTG1 560 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 MAP2K2P36507 400 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 ARL4AP40617 200 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 NPEPPSP55786 919 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 COG2Q14746 738 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 SAMD3Q8N6K7 520 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 AGBL3Q8NEM8 1001 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 INTS13Q9NVM9 706 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 ASNSD1Q9NWL6 643 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 ATF5Q9Y2D1 282 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 DUSP10Q9Y6W6 482 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 KCPQ6ZWJ8 1503 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 EIF3HO15372 352 aaKnown RBP eCLIP11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 MDH1P40925 334 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 PPP2R5DQ14738 602 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 SPATA20Q8TB22 786 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 L1RE1Q9UN81 338 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 A0A087X0T9 212 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 POLRMTO00411 1230 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 FAM228BP0C875 321 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 KRT17Q04695 432 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 AGBL2Q5U5Z8 902 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 TUBB6Q9BUF5 446 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 LACRTQ9GZZ8 138 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 EPN3Q9H201 632 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 DNAJC17Q9NVM6 304 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 SLC12A2P55011 1212 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 FKBP1AP62942 108 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 FUT2Q10981 343 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 BAATQ14032 418 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 FAM133BQ5BKY9 247 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 KCNV1Q6PIU1 500 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 HSPH1Q92598 858 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 APOL6Q9BWW8 343 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 TEX13BQ9BXU2 312 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 A0A0A6YYK5 440 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 GTPBP10A4D1E9 387 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 KRT7P08729 469 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 TAF12Q16514 161 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 ZNF394Q53GI3 561 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 NUGGCQ68CJ6 796 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 KSR1Q8IVT5 923 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 TTC39CQ8N584 583 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 CERKQ8TCT0 537 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 C17orf75Q9HAS0 396 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 SLC38A10Q9HBR0 1119 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 OLFML3Q9NRN5 406 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 BLOC1S4Q9NUP1 217 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 RAB21Q9UL25 225 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 TMX2Q9Y320 296 aa11.48□□□□□ -0.57
LIMCH1-205ENST00000503057 RSPH10B2B2RC85 870 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 PPP1R37O75864 691 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 NR3C2P08235 984 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 RSPH10BP0C881 870 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 HOXA10P31260 410 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 HMGCS2P54868 508 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 BYSLQ13895 437 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 SPARCL1Q14515 664 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 PRPSAP1Q14558 356 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 SDCCAG8Q86SQ7 713 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 ZNF280CQ8ND82 737 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 KLHL29Q96CT2 875 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 AGBL1Q96MI9 1066 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 DDTLA6NHG4 134 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 KRT14P02533 472 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 CARSP49589 748 aaKnown RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms